C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PC4 and SFRS1 interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380733 PSIP1-003 ENSG00000164985 9606 - 9:15464066-15511019 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000380733
Transcript ID Adipose Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000380733 3.134±0.00 4.251±0.00 5.914±2.78 3.394±2.40 6.158±5.08 5.161±0.00 6.265±0.00 0.596±0.00 7.907±3.74 5.305±0.00 27.348±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0001 CGP 9:15163622-15465953
CIL_0005UX CIL_0005UX_0002 CGP 9:15422704-15511019
CIL_00051U CIL_00051U_0002 CGP 9:15464066-16061663

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000395 IDA mRNA 5'-splice site recognition
GO:0001105 IDA RNA polymerase II transcription coactivator activity
GO:0003682 IDA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 IDA nucleoplasm
GO:0005720 IDA nuclear heterochromatin
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006979 ISS response to oxidative stress
GO:0009408 ISS response to heat
GO:0016032 TAS viral process
GO:0033613 IDA activating transcription factor binding
GO:0034399 IDA nuclear periphery
GO:0035327 ISS transcriptionally active chromatin
GO:0044822 IDA poly(A) RNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0075713 TAS establishment of integrated proviral latency
GO:0097100 ISS supercoiled DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030207 Psip1-001 protein_coding Mus_musculus 0 2457
ENSMUST00000118665 Gm15773-001 processed_pseudogene Mus_musculus 0 1707
ENSMUST00000107215 Psip1-002 protein_coding Mus_musculus 0 1452
ENSMUST00000107214 Psip1-003 protein_coding Mus_musculus 0 1443
ENSMUST00000130626 Psip1-006 protein_coding Mus_musculus 0 523
ENSMUST00000152382 Psip1-008 retained_intron Mus_musculus 0 398
ENSMUST00000123262 Snapc3-005 nonsense_mediated_decay Mus_musculus 4e-27 128

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