C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: PC4 and SFRS1 interacting protein 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000028484 Psip1 10090 - 4:83455680-83486459 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000030207 Psip1-001 83455680-83486459 protein_coding
  ENSMUST00000107214 Psip1-003 83461871-83486453 protein_coding
  ENSMUST00000107215 Psip1-002 83461871-83486458 protein_coding
  ENSMUST00000126706 Psip1-004 83461871-83464964 protein_coding
  ENSMUST00000130626 Psip1-006 83476298-83486178 protein_coding
  ENSMUST00000144349 Psip1-005 83462830-83465043 retained_intron
  ENSMUST00000152382 Psip1-008 83458075-83460292 retained_intron

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Gene structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000030207ENSMUST00000107214ENSMUST00000107215ENSMUST00000130626ENSMUST00000152382
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030207 5.392±1.63 N/A 13.334±0.67 36.151±3.67 3.647±0.53 N/A 2.783±0.68 2.494±0.30 14.940±10.38 5.618±0.69 3.282±0.78 26.113±6.78 30.574±20.44 57.371±50.54
ENSMUST00000107214 12.949±0.00 35.046±20.16 N/A 41.348±1.02 32.073±0.00 20.516±9.63 3.279±0.68 N/A 8.370±4.24 7.888±2.09 1.605±0.44 99.370±32.70 12.359±0.00 N/A
ENSMUST00000107215 10.416±0.00 67.738±24.73 N/A 37.976±8.71 42.709±16.27 17.849±5.17 N/A 9.638±8.55 6.566±4.25 10.101±2.99 N/A 64.188±35.55 25.339±14.55 30.298±2.02
ENSMUST00000130626 28.289±0.00 N/A N/A N/A 20.415±0.00 N/A N/A 6.043±0.00 N/A 7.767±0.00 N/A 56.139±22.51 N/A 37.086±0.00
ENSMUST00000152382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 78.620±0.00 61.449±0.00 523.090±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000147 CIL_000147_0002 CGP 4:83220300-83467676
CIL_0005UX CIL_0005UX_0003 CGP 4:83417724-83486459
CIL_00051U CIL_00051U_0003 CGP 4:83455680-83864670

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000395 ISS mRNA 5'-splice site recognition
GO:0001105 ISS RNA polymerase II transcription coactivator activity
GO:0003682 ISS chromatin binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005654 ISS nucleoplasm
GO:0005720 ISS nuclear heterochromatin
GO:0006351 IEA transcription, DNA-templated
GO:0006979 IDA response to oxidative stress
GO:0009408 IDA response to heat
GO:0033613 ISS activating transcription factor binding
GO:0034399 ISS nuclear periphery
GO:0035327 ISS transcriptionally active chromatin
GO:0044822 IEA poly(A) RNA binding
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0097100 ISS supercoiled DNA binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000018745 psip1 PC4 and SFRS1 interacting protein 1 protein_coding Danio_rerio
ENSDARG00000019045 WU:FC32F04 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000077405 si:ch211-116m6.3 PC4 and SFRS1 interacting protein 1 protein_coding Danio_rerio
ENSG00000164985 PSIP1 PC4 and SFRS1 interacting protein 1 protein_coding Homo_sapiens

Loading