C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 55B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165782 TMEM55B 9606 - 14:20457719-20461612 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000250489 TMEM55B-001 20457719-20461612 protein_coding
  ENST00000398020 TMEM55B-003 20457858-20461465 protein_coding
  ENST00000553460 TMEM55B-007 20457858-20459691 protein_coding
  ENST00000553602 TMEM55B-006 20458617-20459592 retained_intron
  ENST00000554028 TMEM55B-005 20458386-20460742 protein_coding
  ENST00000556093 TMEM55B-004 20460261-20460893 protein_coding
  ENST00000557041 TMEM55B-002 20457858-20461401 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000250489ENST00000398020ENST00000557041
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000250489 N/A N/A 2.841±0.00 6.219±0.00 N/A N/A N/A N/A 1.996±0.00 N/A N/A N/A N/A
ENST00000398020 12.360±0.00 25.403±0.00 N/A 24.108±0.00 12.451±0.00 7.909±0.00 18.293±0.00 8.139±0.00 14.693±0.00 12.967±0.00 1.849±0.00 16.031±2.78 14.455±3.40
ENST00000557041 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.976±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z3 CIL_0004Z3_0002 CGP 14:20446411-20457772
CIL_0001O8 CIL_0001O8_0001 CGP 14:20455191-20461612
CIL_0001O9 CIL_0001O9_0001 CGP 14:20457719-20477094

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026387 TMEM55B (1 of 2) transmembrane protein 55B protein_coding Danio_rerio
ENSDARG00000038615 TMEM55B (2 of 2) transmembrane protein 55B protein_coding Danio_rerio
ENSMUSG00000035953 Tmem55b transmembrane protein 55b protein_coding Mus_musculus

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