C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: transmembrane protein 55b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000035953 Tmem55b 10090 - 14:50926070-50930856 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049312 Tmem55b-002 50927215-50930856 protein_coding
  ENSMUST00000159047 Tmem55b-011 50929024-50929763 retained_intron
  ENSMUST00000159745 Tmem55b-005 50927217-50930851 retained_intron
  ENSMUST00000160538 Tmem55b-007 50928826-50930803 protein_coding
  ENSMUST00000160835 Tmem55b-001 50926070-50930849 protein_coding
  ENSMUST00000161166 Tmem55b-004 50927215-50930813 protein_coding
  ENSMUST00000161669 Tmem55b-006 50927866-50929209 protein_coding
  ENSMUST00000162935 Tmem55b-008 50929258-50930838 retained_intron
  ENSMUST00000162957 Tmem55b-003 50927215-50930812 protein_coding
  ENSMUST00000163043 Tmem55b-009 50929335-50930800 retained_intron
  ENSMUST00000163088 Tmem55b-010 50928922-50930833 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049312ENSMUST00000159745ENSMUST00000160835ENSMUST00000161166ENSMUST00000162935ENSMUST00000162957ENSMUST00000163088
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049312 16.290±0.52 N/A 16.306±1.38 N/A N/A 7.648±1.11 2.317±0.00 7.826±2.98 N/A 9.822±1.43 N/A N/A 10.298±5.00 N/A
ENSMUST00000159745 N/A N/A N/A 5.915±3.48 4.723±0.00 N/A 1.621±0.33 N/A 3.315±0.00 5.720±0.00 N/A 3.686±0.06 1.509±0.83 N/A
ENSMUST00000160835 33.407±9.31 14.635±3.79 17.923±8.78 31.781±20.07 25.726±3.15 12.140±3.00 7.905±2.36 13.334±0.77 18.862±9.93 13.023±2.95 5.027±1.05 19.298±7.97 18.928±10.68 16.432±2.10
ENSMUST00000161166 N/A N/A N/A N/A N/A N/A N/A 7.093±1.01 N/A 9.144±0.00 N/A N/A N/A N/A
ENSMUST00000162935 N/A 58.142±17.00 N/A N/A 35.894±8.07 21.853±7.94 N/A 14.339±0.00 9.914±0.68 20.039±3.98 N/A 24.589±7.06 N/A N/A
ENSMUST00000162957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.583±0.00 N/A
ENSMUST00000163088 N/A 45.464±16.35 N/A N/A 44.111±3.03 25.413±5.39 N/A 8.988±0.00 N/A 26.810±9.90 N/A 23.498±12.54 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z3 CIL_0004Z3_0003 CGP 14:50906478-50927139
CIL_0001O8 CIL_0001O8_0002 CGP 14:50924968-50930856
CIL_0001O9 CIL_0001O9_0002 CGP 14:50926070-50965237

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0008150 ND biological_process
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026387 TMEM55B (1 of 2) transmembrane protein 55B protein_coding Danio_rerio
ENSDARG00000038615 TMEM55B (2 of 2) transmembrane protein 55B protein_coding Danio_rerio
ENSG00000165782 TMEM55B transmembrane protein 55B protein_coding Homo_sapiens

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