C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 55B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398020 TMEM55B-003 ENSG00000165782 9606 - 14:20457858-20461465 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000398020
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000398020 12.360±0.00 25.403±0.00 24.108±0.00 12.451±0.00 7.909±0.00 18.293±0.00 8.139±0.00 14.693±0.00 12.967±0.00 1.849±0.00 16.031±2.78 14.455±3.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004Z3 CIL_0004Z3_0002 CGP 14:20446411-20457772
CIL_0001O8 CIL_0001O8_0001 CGP 14:20455191-20461612
CIL_0001O9 CIL_0001O9_0001 CGP 14:20457719-20477094

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0008152 IEA metabolic process
GO:0016021 IEA integral component of membrane
GO:0016787 IEA hydrolase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000160835 Tmem55b-001 protein_coding Mus_musculus 0 1605
ENSMUST00000049312 Tmem55b-002 protein_coding Mus_musculus 0 1471
ENSMUST00000161166 Tmem55b-004 protein_coding Mus_musculus 0 885
ENSMUST00000162957 Tmem55b-003 protein_coding Mus_musculus 0 885
ENSMUST00000163088 Tmem55b-010 retained_intron Mus_musculus 0 795
ENSMUST00000160538 Tmem55b-007 protein_coding Mus_musculus 0 726
ENSMUST00000159745 Tmem55b-005 retained_intron Mus_musculus 0 712
ENSMUST00000163043 Tmem55b-009 retained_intron Mus_musculus 0 580
ENSMUST00000162935 Tmem55b-008 retained_intron Mus_musculus 0 444
ENSMUST00000159047 Tmem55b-011 retained_intron Mus_musculus 0 326

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