C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing ring finger 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402685 PDZRN4-001 ENSG00000165966 9606 + 12:41188448-41574118 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000402685
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000402685 0.092±0.00 1.423±0.00 0.779±0.17 1.029±0.72 3.031±1.36 0.034±0.00 0.153±0.00 3.304±3.29 0.202±0.10 0.110±0.00 0.547±0.25 1.321±1.25 2.235±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0002 CGP 12:40692442-41574590
CIL_0009BF CIL_0009BF_0001 VISTA 12:41055225-41655925
CIL_0003DL CIL_0003DL_0002 CGP 12:41188448-42144879

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169942 Pdzrn4-202 protein_coding Mus_musculus 0 2732
ENSMUST00000035399 Pdzrn4-201 protein_coding Mus_musculus 0 2481
ENSDART00000129735 PDZRN4 (2 of 2)-201 protein_coding Danio_rerio 8e-34 150
ENSMUST00000075994 Pdzrn3-001 protein_coding Mus_musculus 2e-20 106
ENSMUST00000124884 Pdzrn3-004 processed_transcript Mus_musculus 1e-17 97
ENSMUST00000144505 Pdzrn3-002 retained_intron Mus_musculus 0.00000000005 75

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