C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing ring finger 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000548316 PDZRN4-004 ENSG00000165966 9606 + 12:41509551-41574590 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000548316
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000548316 0.145±0.00 0.486±0.00 0.246±0.00 0.411±0.00 0.472±0.35 2.881±1.79 0.048±0.00 0.201±0.02 0.060±0.00 0.553±0.00 0.070±0.00 0.121±0.00 1.238±0.00 1.412±0.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DM CIL_0003DM_0002 CGP 12:40692442-41574590
CIL_0009BF CIL_0009BF_0001 VISTA 12:41055225-41655925
CIL_0003DL CIL_0003DL_0002 CGP 12:41188448-42144879

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000035399 Pdzrn4-201 protein_coding Mus_musculus 0 2359
ENSMUST00000169942 Pdzrn4-202 protein_coding Mus_musculus 0 2359
ENSDART00000129735 PDZRN4 (2 of 2)-201 protein_coding Danio_rerio 7e-34 150

Loading