C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: RIC3 acetylcholine receptor chaperone
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000166405 RIC3 9606 - 11:8106093-8169055 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000309737 RIC3-008 8108949-8168989 protein_coding
  ENST00000335425 RIC3-001 8106093-8169043 protein_coding
  ENST00000343202 RIC3-002 8108942-8169055 protein_coding
  ENST00000419822 RIC3-004 8139054-8169025 protein_coding
  ENST00000425599 RIC3-009 8110698-8168989 protein_coding
  ENST00000524799 RIC3-014 8110244-8138559 processed_transcript
  ENST00000526962 RIC3-003 8109436-8169040 nonsense_mediated_decay
  ENST00000528463 RIC3-005 8110665-8169008 nonsense_mediated_decay
  ENST00000529035 RIC3-013 8135787-8140186 processed_transcript
  ENST00000529271 RIC3-015 8135582-8138425 processed_transcript
  ENST00000530060 RIC3-010 8110470-8138778 processed_transcript
  ENST00000531450 RIC3-006 8110907-8169021 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000335425ENST00000343202ENST00000419822ENST00000524799ENST00000526962ENST00000529271ENST00000531450
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000335425 N/A 1.618±0.00 0.437±0.00 N/A 0.516±0.00 0.218±0.00 0.040±0.00 N/A N/A 0.504±0.47 1.030±0.00
ENST00000343202 N/A 3.207±0.00 N/A 0.703±0.22 N/A 1.409±0.00 0.111±0.00 0.936±0.00 N/A 1.438±1.37 N/A
ENST00000419822 2.157±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524799 2.873±0.00 N/A N/A N/A N/A 0.459±0.00 N/A N/A N/A 0.124±0.00 4.662±0.00
ENST00000526962 N/A N/A N/A N/A N/A N/A N/A N/A 0.655±0.00 N/A N/A
ENST00000529271 N/A N/A 3.323±0.00 4.613±0.00 N/A 2.002±0.00 N/A N/A N/A N/A N/A
ENST00000531450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.073±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0001 VISTA 11:7589795-8192277
CIL_0009BA CIL_0009BA_0001 VISTA 11:7904499-8509136
CIL_0008M3 CIL_0008M3_0001 VISTA 11:7953590-8554788
CIL_00046S CIL_00046S_0001 CGP 11:7970251-8106112
CIL_0009BB CIL_0009BB_0001 VISTA 11:7996158-8596683
CIL_0007IX CIL_0007IX_0002 CGP 11:8019244-8169055
CIL_00043B CIL_00043B_0001 CGP 11:8106093-8268716

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0006457 IEA protein folding
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007271 IEA synaptic transmission, cholinergic
GO:0016021 IEA integral component of membrane
GO:0033130 IEA acetylcholine receptor binding
GO:0043623 IEA cellular protein complex assembly
GO:0044183 IEA protein binding involved in protein folding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075986 RIC3 (1 of 2) RIC3 acetylcholine receptor chaperone protein_coding Danio_rerio
ENSDARG00000077459 RIC3 (2 of 2) RIC3 acetylcholine receptor chaperone protein_coding Danio_rerio
ENSMUSG00000048330 Ric3 resistance to inhibitors of cholinesterase 3 homolog (C. elegans) protein_coding Mus_musculus

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