C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: resistance to inhibitors of cholinesterase 3 homolog (C. elegans)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048330 Ric3 10090 - 7:109034312-109083331 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000055993 Ric3-001 109034312-109083331 protein_coding
  ENSMUST00000120876 Ric3-002 109037948-109083322 protein_coding
  ENSMUST00000129629 Ric3-006 109080744-109083305 processed_transcript
  ENSMUST00000133876 Ric3-003 109045382-109083311 retained_intron
  ENSMUST00000137385 Ric3-004 109057487-109083322 retained_intron
  ENSMUST00000147580 Ric3-005 109034312-109057824 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055993ENSMUST00000120876ENSMUST00000133876ENSMUST00000137385ENSMUST00000147580
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055993 0.784±0.44 6.988±0.00 N/A N/A 0.398±0.13 0.109±0.03 0.117±0.02 0.077±0.04 0.447±0.02 0.225±0.07 0.614±0.30 0.136±0.03 1.589±0.16
ENSMUST00000120876 N/A N/A N/A N/A N/A N/A N/A 0.063±0.02 N/A 0.349±0.00 1.668±0.00 0.142±0.00 N/A
ENSMUST00000133876 N/A N/A N/A N/A N/A N/A N/A 0.027±0.01 N/A N/A N/A N/A N/A
ENSMUST00000137385 N/A 115.715±23.29 N/A N/A 1.925±0.39 N/A 0.892±0.00 0.079±0.03 1.953±0.27 N/A N/A N/A N/A
ENSMUST00000147580 0.601±0.00 8.256±0.45 8.576±0.00 0.661±0.16 N/A 0.055±0.00 N/A 0.100±0.07 0.211±0.00 0.343±0.01 0.586±0.14 0.143±0.00 1.539±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096V CIL_00096V_0002 VISTA 7:108496607-109099113
CIL_0009BA CIL_0009BA_0002 VISTA 7:108813133-109417303
CIL_0008M3 CIL_0008M3_0002 VISTA 7:108861322-109462713
CIL_0009BB CIL_0009BB_0002 VISTA 7:108902812-109503341
CIL_00046S CIL_00046S_0002 CGP 7:108934417-109034460
CIL_0007IX CIL_0007IX_0003 CGP 7:109010825-109083331
CIL_00043B CIL_00043B_0002 CGP 7:109034312-109170308

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IDA endoplasmic reticulum
GO:0006457 IDA protein folding
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007271 IEA synaptic transmission, cholinergic
GO:0016021 IDA integral component of membrane
GO:0033130 IEA acetylcholine receptor binding
GO:0043623 IDA cellular protein complex assembly
GO:0044183 IDA protein binding involved in protein folding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000075986 RIC3 (1 of 2) RIC3 acetylcholine receptor chaperone protein_coding Danio_rerio
ENSDARG00000077459 RIC3 (2 of 2) RIC3 acetylcholine receptor chaperone protein_coding Danio_rerio
ENSG00000166405 RIC3 RIC3 acetylcholine receptor chaperone protein_coding Homo_sapiens

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