C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre-B-cell leukemia homeobox 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000167081 PBX3 9606 + 9:125747345-125967377 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000342287 PBX3-001 125747345-125967377 protein_coding
  ENST00000373482 PBX3-010 125747454-125965990 nonsense_mediated_decay
  ENST00000373487 PBX3-007 125747374-125967377 protein_coding
  ENST00000373489 PBX3-006 125747438-125967377 protein_coding
  ENST00000373492 PBX3-005 125747454-125965923 nonsense_mediated_decay
  ENST00000428092 PBX3-008 125865271-125935531 protein_coding
  ENST00000447726 PBX3-002 125748199-125967377 protein_coding
  ENST00000491160 PBX3-014 125843735-125915869 processed_transcript
  ENST00000491787 PBX3-009 125748182-125929845 protein_coding
  ENST00000492314 PBX3-004 125748931-125749537 retained_intron
  ENST00000497091 PBX3-003 125747374-125797465 processed_transcript
  ENST00000538998 PBX3-013 125843713-125965940 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342287ENST00000373482ENST00000373487ENST00000373489ENST00000373492ENST00000428092ENST00000447726ENST00000491787ENST00000492314ENST00000497091ENST00000538998
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342287 0.821±0.00 0.746±0.00 0.920±0.00 N/A 1.904±0.16 5.286±0.00 3.593±2.94 1.296±0.93 1.499±0.00 1.233±0.00 0.598±0.00 5.311±6.13 1.585±0.74 1.588±0.00
ENST00000373482 N/A N/A N/A N/A 1.489±0.00 N/A N/A N/A 1.730±0.00 N/A N/A N/A N/A N/A
ENST00000373487 N/A N/A N/A N/A N/A N/A N/A N/A 0.772±0.00 N/A N/A N/A N/A N/A
ENST00000373489 1.627±0.00 0.823±0.00 N/A 0.242±0.00 N/A 7.939±0.00 6.304±3.40 N/A 0.916±0.00 2.470±0.00 3.324±0.00 7.463±7.89 0.956±0.65 3.261±1.26
ENST00000373492 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.774±0.72 0.488±0.00 N/A N/A N/A
ENST00000428092 N/A N/A N/A 1.622±0.00 5.426±0.00 N/A N/A N/A 4.175±0.00 3.270±0.00 N/A N/A N/A N/A
ENST00000447726 N/A N/A N/A 0.252±0.00 N/A N/A N/A N/A 0.856±0.00 1.636±0.00 N/A N/A N/A N/A
ENST00000491787 N/A N/A N/A N/A N/A N/A N/A N/A 3.783±0.00 N/A N/A N/A N/A N/A
ENST00000492314 0.083±0.00 0.126±0.00 0.790±0.00 0.248±0.12 0.636±0.36 0.323±0.24 0.084±0.02 0.643±0.58 1.005±0.00 1.184±1.00 0.130±0.00 0.739±0.41 0.096±0.03 1.605±1.23
ENST00000497091 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.072±0.00 N/A N/A
ENST00000538998 1.419±0.00 N/A N/A N/A N/A N/A 2.518±0.00 0.812±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080V CIL_00080V_0001 VISTA 9:125333480-125934659
CIL_0008LX CIL_0008LX_0001 VISTA 9:125343868-125945374
CIL_0007LN CIL_0007LN_0001 UCNEbase 9:125397521-126491100
CIL_0008Q0 CIL_0008Q0_0001 VISTA 9:125454655-126056093
CIL_0008GT CIL_0008GT_0001 VISTA 9:125458713-126060374
CIL_000961 CIL_000961_0001 VISTA 9:125460596-126063163
CIL_0008R5 CIL_0008R5_0001 VISTA 9:125463069-126064935
CIL_000848 CIL_000848_0001 VISTA 9:125521677-126122201
CIL_0008I6 CIL_0008I6_0001 VISTA 9:125544240-126146071
CIL_00086D CIL_00086D_0001 VISTA 9:125577886-126179048
CIL_0007YW CIL_0007YW_0001 VISTA 9:125583183-126184818
CIL_0007QH CIL_0007QH_0001 VISTA 9:125604132-126205273
CIL_000849 CIL_000849_0001 VISTA 9:125609586-126210723
CIL_000960 CIL_000960_0001 VISTA 9:125672879-126273895

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002087 IEA regulation of respiratory gaseous exchange by neurological system process
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007387 TAS anterior compartment pattern formation
GO:0007388 TAS posterior compartment specification
GO:0007585 IEA respiratory gaseous exchange
GO:0008344 IEA adult locomotory behavior
GO:0021516 IEA dorsal spinal cord development
GO:0043565 IEA sequence-specific DNA binding
GO:0048666 IEA neuron development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000038718 Pbx3 pre B cell leukemia homeobox 3 protein_coding Mus_musculus

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