C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: pre B cell leukemia homeobox 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000038718 Pbx3 10090 - 2:34171457-34373142 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040638 Pbx3-001 34171723-34372044 protein_coding
  ENSMUST00000113132 Pbx3-002 34171457-34372038 protein_coding
  ENSMUST00000127353 Pbx3-008 34224534-34371150 protein_coding
  ENSMUST00000138021 Pbx3-007 34213400-34373142 protein_coding
  ENSMUST00000141653 Pbx3-009 34224407-34371253 protein_coding
  ENSMUST00000143776 Pbx3-004 34172881-34371920 nonsense_mediated_decay
  ENSMUST00000153278 Pbx3-003 34172881-34371920 nonsense_mediated_decay
  ENSMUST00000155423 Pbx3-005 34368112-34371792 retained_intron
  ENSMUST00000175855 Pbx3-006 34176859-34370846 nonsense_mediated_decay
  ENSMUST00000176213 Pbx3-010 34172873-34288852 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040638ENSMUST00000113132ENSMUST00000143776ENSMUST00000153278ENSMUST00000176213
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040638 1.910±0.30 21.974±1.24 4.560±0.34 15.548±13.43 1.103±0.51 3.897±1.40 1.643±0.27 1.674±0.65 1.977±1.95 4.461±1.42 0.222±0.07 3.644±2.03 0.536±0.09 2.028±0.36
ENSMUST00000113132 0.784±0.50 17.744±0.00 1.727±0.52 22.387±16.78 0.215±0.00 3.087±0.00 0.652±0.10 1.274±0.49 1.364±1.26 1.653±0.80 0.358±0.13 2.953±0.98 0.854±0.43 0.583±0.15
ENSMUST00000143776 N/A N/A N/A N/A 1.271±0.00 N/A N/A N/A 0.407±0.00 N/A N/A N/A N/A 1.015±0.59
ENSMUST00000153278 N/A N/A N/A N/A N/A N/A N/A N/A 0.404±0.00 N/A N/A N/A N/A N/A
ENSMUST00000176213 N/A N/A N/A 1.844±0.00 N/A N/A N/A N/A N/A N/A N/A 2.630±0.00 N/A 1.074±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007X9 CIL_0007X9_0002 VISTA 2:33575330-34178839
CIL_00095V CIL_00095V_0002 VISTA 2:33716020-34317341
CIL_0007YU CIL_0007YU_0002 VISTA 2:33733022-34333763
CIL_0007LN CIL_0007LN_0002 UCNEbase 2:33746984-34647960
CIL_0008R2 CIL_0008R2_0002 VISTA 2:33764832-34366528
CIL_000960 CIL_000960_0002 VISTA 2:33866778-34467772
CIL_000849 CIL_000849_0002 VISTA 2:33929436-34530577
CIL_0007QH CIL_0007QH_0002 VISTA 2:33935168-34536289
CIL_0007YW CIL_0007YW_0002 VISTA 2:33955333-34557138
CIL_00086D CIL_00086D_0002 VISTA 2:33960195-34561369
CIL_0008I6 CIL_0008I6_0002 VISTA 2:33986508-34588340
CIL_000848 CIL_000848_0002 VISTA 2:34010581-34611103
CIL_0008R5 CIL_0008R5_0002 VISTA 2:34054690-34656547
CIL_000961 CIL_000961_0002 VISTA 2:34056455-34659025
CIL_0008GT CIL_0008GT_0002 VISTA 2:34059231-34660874
CIL_0008Q0 CIL_0008Q0_0002 VISTA 2:34063448-34664810
CIL_0008LX CIL_0008LX_0002 VISTA 2:34155217-34756803
CIL_00080V CIL_00080V_0002 VISTA 2:34162107-34763282

Gene Ontology
GO IDEvidence TypeGO Description
GO:0002087 IMP regulation of respiratory gaseous exchange by neurological system process
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007585 IMP respiratory gaseous exchange
GO:0008344 IMP adult locomotory behavior
GO:0021516 IMP dorsal spinal cord development
GO:0043565 IDA sequence-specific DNA binding
GO:0048666 IMP neuron development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000167081 PBX3 pre-B-cell leukemia homeobox 3 protein_coding Homo_sapiens

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