C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373489 PBX3-006 ENSG00000167081 9606 + 9:125747438-125967377 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000373489
Transcript ID Adipose Adrenal Brain Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000373489 1.627±0.00 0.823±0.00 0.242±0.00 7.939±0.00 6.304±3.40 0.916±0.00 2.470±0.00 3.324±0.00 7.463±7.89 0.956±0.65 3.261±1.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080V CIL_00080V_0001 VISTA 9:125333480-125934659
CIL_0008LX CIL_0008LX_0001 VISTA 9:125343868-125945374
CIL_0007LN CIL_0007LN_0001 UCNEbase 9:125397521-126491100
CIL_0008Q0 CIL_0008Q0_0001 VISTA 9:125454655-126056093
CIL_0008GT CIL_0008GT_0001 VISTA 9:125458713-126060374
CIL_000961 CIL_000961_0001 VISTA 9:125460596-126063163
CIL_0008R5 CIL_0008R5_0001 VISTA 9:125463069-126064935
CIL_000848 CIL_000848_0001 VISTA 9:125521677-126122201
CIL_0008I6 CIL_0008I6_0001 VISTA 9:125544240-126146071
CIL_00086D CIL_00086D_0001 VISTA 9:125577886-126179048
CIL_0007YW CIL_0007YW_0001 VISTA 9:125583183-126184818
CIL_0007QH CIL_0007QH_0001 VISTA 9:125604132-126205273
CIL_000849 CIL_000849_0001 VISTA 9:125609586-126210723
CIL_000960 CIL_000960_0001 VISTA 9:125672879-126273895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002087 IEA regulation of respiratory gaseous exchange by neurological system process
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005667 IEA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007387 TAS anterior compartment pattern formation
GO:0007388 TAS posterior compartment specification
GO:0007585 IEA respiratory gaseous exchange
GO:0008344 IEA adult locomotory behavior
GO:0021516 IEA dorsal spinal cord development
GO:0043565 IEA sequence-specific DNA binding
GO:0048666 IEA neuron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040638 Pbx3-001 protein_coding Mus_musculus 0 3193
ENSMUST00000113132 Pbx3-002 protein_coding Mus_musculus 0 1659
ENSMUST00000153278 Pbx3-003 nonsense_mediated_decay Mus_musculus 0 1234
ENSMUST00000176213 Pbx3-010 processed_transcript Mus_musculus 0 1171
ENSMUST00000143776 Pbx3-004 nonsense_mediated_decay Mus_musculus 0 741
ENSMUST00000175855 Pbx3-006 nonsense_mediated_decay Mus_musculus 0 737
ENSMUST00000138021 Pbx3-007 protein_coding Mus_musculus 0 625
ENSMUST00000141653 Pbx3-009 protein_coding Mus_musculus 0 555
ENSMUST00000127353 Pbx3-008 protein_coding Mus_musculus 0 318
ENSMUST00000155423 Pbx3-005 retained_intron Mus_musculus 0 257

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