| Source ID |
Type |
Tax ID |
Position |
| PBX3 |
UCNEbase |
7955 |
3:12880404-12884283  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007LN_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LN_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LN_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LN_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000119487' => 'mitogen-activated protein kinase associated protein 1',
'ENSG00000167081' => 'pre-B-cell leukemia homeobox 3',
'ENSG00000196814' => 'multivesicular body subunit 12B',
'ENSG00000214761' => 'heterogeneous nuclear ribonucleoprotein A1 pseudogene 15',
'ENSG00000227068' => null,
'ENSG00000228392' => null,
'ENSG00000229582' => null,
'ENSG00000232413' => null,
'ENSG00000243845' => 'RNA, 7SL, cytoplasmic 30, pseudogene',
'ENSG00000252985' => 'Small nucleolar RNA SNORD116',
'ENSG00000253079' => 'non-protein coding RNA, repressor of NFAT',
'ENSG00000274510' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000038696' => 'mitogen-activated protein kinase associated protein 1',
'ENSMUSG00000038718' => 'pre B cell leukemia homeobox 3',
'ENSMUSG00000038740' => 'multivesicular body subunit 12B',
'ENSMUSG00000081992' => 'predicted gene 13408',
'ENSMUSG00000083233' => 'predicted gene 13406',
'ENSMUSG00000083503' => 'predicted gene 13407',
'ENSMUSG00000084908' => 'expressed sequence C79798',
'ENSMUSG00000085987' => 'predicted gene 13403',
'ENSMUSG00000086484' => 'non-protein coding RNA, repressor of NFAT',
'ENSMUSG00000086904' => 'predicted gene 13404',
'ENSMUSG00000087461' => 'RIKEN cDNA C230014O12 gene',
'ENSMUSG00000089596' => 'non-protein coding RNA, repressor of NFAT',
'ENSDARG00000013615' => 'pre-B-cell leukemia transcription factor 3b',
'ENSDARG00000079478' => 'multivesicular body subunit 12Bb',
'ENSDARG00000089760' => '5S ribosomal RNA',
'ENSDARG00000094865' => 'si:ch211-244l7.1'
),
'gene_name_arr' => array(
'ENSG00000119487' => 'MAPKAP1',
'ENSG00000167081' => 'PBX3',
'ENSG00000196814' => 'MVB12B',
'ENSG00000214761' => 'HNRNPA1P15',
'ENSG00000227068' => 'RP11-12A16.3',
'ENSG00000228392' => 'RP11-343J18.1',
'ENSG00000229582' => 'RP11-423C15.3',
'ENSG00000232413' => 'RP11-343J18.2',
'ENSG00000243845' => 'RN7SL30P',
'ENSG00000252985' => 'SNORD116',
'ENSG00000253079' => 'NRON',
'ENSG00000274510' => 'Metazoa_SRP',
'ENSMUSG00000038696' => 'Mapkap1',
'ENSMUSG00000038718' => 'Pbx3',
'ENSMUSG00000038740' => 'Mvb12b',
'ENSMUSG00000081992' => 'Gm13408',
'ENSMUSG00000083233' => 'Gm13406',
'ENSMUSG00000083503' => 'Gm13407',
'ENSMUSG00000084908' => 'C79798',
'ENSMUSG00000085987' => 'Gm13403',
'ENSMUSG00000086484' => 'Nron',
'ENSMUSG00000086904' => 'Gm13404',
'ENSMUSG00000087461' => 'C230014O12Rik',
'ENSMUSG00000089596' => 'Nron',
'ENSDARG00000013615' => 'pbx3b',
'ENSDARG00000079478' => 'mvb12bb',
'ENSDARG00000089760' => '5S_rRNA',
'ENSDARG00000094865' => 'si:ch211-244l7.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 68 => 'Brain',
(int) 106 => 'Breast',
(int) 143 => 'Colon',
(int) 170 => 'Heart',
(int) 197 => 'Kidney',
(int) 233 => 'Liver',
(int) 278 => 'Lung',
(int) 310 => 'Muscle',
(int) 337 => 'Ovary',
(int) 378 => 'Placenta',
(int) 408 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 103,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000265960' => array(
'start' => '125437394',
'end' => '125707234',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-201'
),
'ENST00000350766' => array(
'start' => '125437394',
'end' => '125707203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-007'
),
'ENST00000373496' => array(
'start' => '125657669',
'end' => '125707198',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-012'
),
'ENST00000373498' => array(
'start' => '125437394',
'end' => '125672643',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-009'
),
'ENST00000373503' => array(
'start' => '125437394',
'end' => '125707212',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-008'
),
'ENST00000373511' => array(
'start' => '125437393',
'end' => '125707231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-015'
),
'ENST00000394060' => array(
'start' => '125521468',
'end' => '125707231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-003'
),
'ENST00000394063' => array(
'start' => '125437394',
'end' => '125707234',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-202'
),
'ENST00000420643' => array(
'start' => '125444501',
'end' => '125650417',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-005'
),
'ENST00000427078' => array(
'start' => '125543059',
'end' => '125707177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-013'
),
'ENST00000433483' => array(
'start' => '125669887',
'end' => '125707202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-006'
),
'ENST00000437973' => array(
'start' => '125559114',
'end' => '125585627',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-010'
),
'ENST00000444226' => array(
'start' => '125438469',
'end' => '125484501',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-004'
),
'ENST00000448439' => array(
'start' => '125565366',
'end' => '125669845',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-011'
),
'ENST00000468896' => array(
'start' => '125559783',
'end' => '125657710',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-014'
),
'ENST00000473837' => array(
'start' => '125505944',
'end' => '125650461',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MAPKAP1-017'
),
'ENST00000483937' => array(
'start' => '125438469',
'end' => '125471905',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-001'
),
'ENST00000496063' => array(
'start' => '125438813',
'end' => '125506366',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-018'
),
'ENST00000496658' => array(
'start' => '125438707',
'end' => '125451101',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-002'
),
'ENST00000497932' => array(
'start' => '125438655',
'end' => '125595646',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MAPKAP1-016'
),
'ENST00000342287' => array(
'start' => '125747345',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-001'
),
'ENST00000373482' => array(
'start' => '125747454',
'end' => '125965990',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PBX3-010'
),
'ENST00000373487' => array(
'start' => '125747374',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-007'
),
'ENST00000373489' => array(
'start' => '125747438',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-006'
),
'ENST00000373492' => array(
'start' => '125747454',
'end' => '125965923',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PBX3-005'
),
'ENST00000428092' => array(
'start' => '125865271',
'end' => '125935531',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-008'
),
'ENST00000447726' => array(
'start' => '125748199',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-002'
),
'ENST00000491160' => array(
'start' => '125843735',
'end' => '125915869',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-014'
),
'ENST00000491787' => array(
'start' => '125748182',
'end' => '125929845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-009'
),
'ENST00000492314' => array(
'start' => '125748931',
'end' => '125749537',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PBX3-004'
),
'ENST00000497091' => array(
'start' => '125747374',
'end' => '125797465',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-003'
),
'ENST00000538998' => array(
'start' => '125843713',
'end' => '125965940',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-013'
),
'ENST00000361171' => array(
'start' => '126326849',
'end' => '126507041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MVB12B-001'
),
'ENST00000402437' => array(
'start' => '126335219',
'end' => '126395697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MVB12B-004'
),
'ENST00000470567' => array(
'start' => '126395640',
'end' => '126448409',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-006'
),
'ENST00000485886' => array(
'start' => '126480813',
'end' => '126507041',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-003'
),
'ENST00000489570' => array(
'start' => '126421854',
'end' => '126448409',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-005'
),
'ENST00000489637' => array(
'start' => '126326862',
'end' => '126397633',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-002'
),
'ENST00000444886' => array(
'start' => '125595669',
'end' => '125596628',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HNRNPA1P15-001'
),
'ENST00000437097' => array(
'start' => '125567579',
'end' => '125573023',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-12A16.3-001'
),
'ENST00000419853' => array(
'start' => '126270121',
'end' => '126275918',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-343J18.1-001'
),
'ENST00000444800' => array(
'start' => '125743754',
'end' => '125745740',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-423C15.3-002'
),
'ENST00000606827' => array(
'start' => '125744347',
'end' => '125746552',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP11-423C15.3-001'
),
'ENST00000614664' => array(
'start' => '125744377',
'end' => '125746552',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RP11-423C15.3-201'
),
'ENST00000441473' => array(
'start' => '126057580',
'end' => '126159613',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-343J18.2-001'
),
'ENST00000488416' => array(
'start' => '125512902',
'end' => '125513207',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL30P-201'
),
'ENST00000517176' => array(
'start' => '126426893',
'end' => '126426970',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORD116.1-203'
),
'ENST00000517270' => array(
'start' => '126408041',
'end' => '126408410',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'NRON-201'
),
'ENST00000618720' => array(
'start' => '125417305',
'end' => '125417586',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-283'
),
'ENSMUST00000040459' => array(
'start' => '34406952',
'end' => '34623533',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-002'
),
'ENSMUST00000113123' => array(
'start' => '34406886',
'end' => '34623564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-005'
),
'ENSMUST00000113124' => array(
'start' => '34406878',
'end' => '34623564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-004'
),
'ENSMUST00000113126' => array(
'start' => '34432025',
'end' => '34624950',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-201'
),
'ENSMUST00000124443' => array(
'start' => '34406862',
'end' => '34623475',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-003'
),
'ENSMUST00000129633' => array(
'start' => '34619582',
'end' => '34623919',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-011'
),
'ENSMUST00000137021' => array(
'start' => '34444347',
'end' => '34497873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-006'
),
'ENSMUST00000138933' => array(
'start' => '34438494',
'end' => '34533898',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-009'
),
'ENSMUST00000141253' => array(
'start' => '34406869',
'end' => '34432132',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-008'
),
'ENSMUST00000147337' => array(
'start' => '34407183',
'end' => '34624949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-001'
),
'ENSMUST00000149383' => array(
'start' => '34406771',
'end' => '34444408',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-007'
),
'ENSMUST00000156967' => array(
'start' => '34406872',
'end' => '34478768',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-010'
),
'ENSMUST00000040638' => array(
'start' => '34171723',
'end' => '34372044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-001'
),
'ENSMUST00000113132' => array(
'start' => '34171457',
'end' => '34372038',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-002'
),
'ENSMUST00000127353' => array(
'start' => '34224534',
'end' => '34371150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-008'
),
'ENSMUST00000138021' => array(
'start' => '34213400',
'end' => '34373142',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-007'
),
'ENSMUST00000141653' => array(
'start' => '34224407',
'end' => '34371253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-009'
),
'ENSMUST00000143776' => array(
'start' => '34172881',
'end' => '34371920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-004'
),
'ENSMUST00000153278' => array(
'start' => '34172881',
'end' => '34371920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-003'
),
'ENSMUST00000155423' => array(
'start' => '34368112',
'end' => '34371792',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pbx3-005'
),
'ENSMUST00000175855' => array(
'start' => '34176859',
'end' => '34370846',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-006'
),
'ENSMUST00000176213' => array(
'start' => '34172873',
'end' => '34288852',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pbx3-010'
),
'ENSMUST00000041555' => array(
'start' => '33729953',
'end' => '33887946',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mvb12b-001'
),
'ENSMUST00000146892' => array(
'start' => '33873614',
'end' => '33887482',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mvb12b-003'
),
'ENSMUST00000148660' => array(
'start' => '33825048',
'end' => '33886845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mvb12b-002'
),
'ENSMUST00000119822' => array(
'start' => '34564999',
'end' => '34565796',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13408-001'
),
'ENSMUST00000121991' => array(
'start' => '34436327',
'end' => '34436582',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13406-001'
),
'ENSMUST00000118256' => array(
'start' => '34412988',
'end' => '34413347',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13407-001'
),
'ENSMUST00000131588' => array(
'start' => '34287771',
'end' => '34304440',
'transcript_biotype' => 'antisense',
'transcript_name' => 'C79798-001'
),
'ENSMUST00000127936' => array(
'start' => '33935788',
'end' => '33942113',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-001'
),
'ENSMUST00000130988' => array(
'start' => '33938758',
'end' => '33942111',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-003'
),
'ENSMUST00000134271' => array(
'start' => '33937895',
'end' => '33942145',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-002'
),
'ENSMUST00000140412' => array(
'start' => '33805859',
'end' => '33811438',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-003'
),
'ENSMUST00000151761' => array(
'start' => '33805828',
'end' => '33812455',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-002'
),
'ENSMUST00000156297' => array(
'start' => '33805816',
'end' => '33813591',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-001'
),
'ENSMUST00000156633' => array(
'start' => '33978246',
'end' => '33980324',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13404-001'
),
'ENSMUST00000134921' => array(
'start' => '34018289',
'end' => '34107729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-001'
),
'ENSMUST00000147871' => array(
'start' => '34097397',
'end' => '34111444',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-003'
),
'ENSMUST00000149707' => array(
'start' => '34100044',
'end' => '34107735',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-002'
),
'ENSMUST00000158971' => array(
'start' => '33812957',
'end' => '33813326',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Nron-201'
),
'ENSDART00000040126' => array(
'start' => '34751710',
'end' => '34779303',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-201'
),
'ENSDART00000048994' => array(
'start' => '34751686',
'end' => '34783842',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-202'
),
'ENSDART00000098822' => array(
'start' => '34751686',
'end' => '34906339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-203'
),
'ENSDART00000105204' => array(
'start' => '34751686',
'end' => '34906339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-204'
),
'ENSDART00000134426' => array(
'start' => '34761168',
'end' => '34764858',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-006'
),
'ENSDART00000134681' => array(
'start' => '34761203',
'end' => '34772157',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-004'
),
'ENSDART00000138048' => array(
'start' => '34761168',
'end' => '34773368',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-003'
),
'ENSDART00000140712' => array(
'start' => '34761168',
'end' => '34767772',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-005'
),
'ENSDART00000147444' => array(
'start' => '34761168',
'end' => '34779302',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-002'
),
'ENSDART00000109600' => array(
'start' => '34269261',
'end' => '34408468',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mvb12bb-201'
),
'ENSDART00000138921' => array(
'start' => '34268719',
'end' => '34417006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mvb12bb-001'
),
'ENSDART00000124675' => array(
'start' => '34631480',
'end' => '34631596',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1798-201'
),
'ENSDART00000134904' => array(
'start' => '34505133',
'end' => '34524831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-244l7.1-001'
),
'ENSDART00000156506' => array(
'start' => '34470446',
'end' => '34524834',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-244l7.1-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LN_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LN_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LN_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LN_0001' => array(
'genes_in_region' => array(
'ENSG00000119487' => array(
[maximum depth reached]
),
'ENSG00000167081' => array(
[maximum depth reached]
),
'ENSG00000196814' => array(
[maximum depth reached]
),
'ENSG00000214761' => array(
[maximum depth reached]
),
'ENSG00000227068' => array(
[maximum depth reached]
),
'ENSG00000228392' => array(
[maximum depth reached]
),
'ENSG00000229582' => array(
[maximum depth reached]
),
'ENSG00000243845' => array(
[maximum depth reached]
),
'ENSG00000253079' => array(
[maximum depth reached]
),
'ENSG00000274510' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Bladder',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adrenal',
(int) 41 => 'Kidney',
(int) 42 => 'Ovary',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Testis',
(int) 53 => 'Colon',
(int) 54 => 'Muscle',
(int) 55 => 'Breast',
(int) 56 => 'Muscle',
(int) 57 => 'Bladder',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Liver',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Muscle',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Breast',
(int) 77 => 'Liver',
(int) 78 => 'Liver',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Liver',
(int) 85 => 'Lung',
(int) 86 => 'Muscle',
(int) 87 => 'Ovary',
(int) 88 => 'Placenta',
(int) 89 => 'Testis',
(int) 90 => 'Lung',
(int) 91 => 'Muscle',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Liver',
(int) 95 => 'Lung',
(int) 96 => 'Brain',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Liver',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Ovary',
(int) 115 => 'Adipose',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Bladder',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Colon',
(int) 124 => 'Heart',
(int) 125 => 'Kidney',
(int) 126 => 'Liver',
(int) 127 => 'Lung',
(int) 128 => 'Muscle',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Ovary',
(int) 133 => 'Testis',
(int) 134 => 'Breast',
(int) 135 => 'Lung',
(int) 136 => 'Ovary',
(int) 137 => 'Breast',
(int) 138 => 'Colon',
(int) 139 => 'Kidney',
(int) 140 => 'Liver',
(int) 141 => 'Adipose',
(int) 142 => 'Adrenal',
(int) 143 => 'Breast',
(int) 144 => 'Colon',
(int) 145 => 'Heart',
(int) 146 => 'Kidney',
(int) 147 => 'Liver',
(int) 148 => 'Lung',
(int) 149 => 'Ovary',
(int) 150 => 'Placenta',
(int) 151 => 'Testis',
(int) 152 => 'Adipose',
(int) 153 => 'Adrenal',
(int) 154 => 'Bladder',
(int) 155 => 'Brain',
(int) 156 => 'Breast',
(int) 157 => 'Colon',
(int) 158 => 'Kidney',
(int) 159 => 'Liver',
(int) 160 => 'Lung',
(int) 161 => 'Ovary',
(int) 162 => 'Placenta',
(int) 163 => 'Testis',
(int) 164 => 'Adrenal',
(int) 165 => 'Brain',
(int) 166 => 'Breast',
(int) 167 => 'Lung',
(int) 168 => 'Testis',
(int) 169 => 'Placenta',
(int) 170 => 'Testis',
(int) 171 => 'Colon',
(int) 172 => 'Liver',
(int) 173 => 'Ovary',
(int) 174 => 'Testis',
(int) 175 => 'Adipose',
(int) 176 => 'Adrenal',
(int) 177 => 'Brain',
(int) 178 => 'Breast',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Kidney',
(int) 188 => 'Ovary',
(int) 189 => 'Adipose',
(int) 190 => 'Adrenal',
(int) 191 => 'Brain',
(int) 192 => 'Breast',
(int) 193 => 'Colon',
(int) 194 => 'Heart',
(int) 195 => 'Kidney',
(int) 196 => 'Liver',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Testis'
)
),
'CIL_0007LN_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038696' => array(
[maximum depth reached]
),
'ENSMUSG00000038718' => array(
[maximum depth reached]
),
'ENSMUSG00000038740' => array(
[maximum depth reached]
),
'ENSMUSG00000081992' => array(
[maximum depth reached]
),
'ENSMUSG00000083233' => array(
[maximum depth reached]
),
'ENSMUSG00000083503' => array(
[maximum depth reached]
),
'ENSMUSG00000084908' => array(
[maximum depth reached]
),
'ENSMUSG00000085987' => array(
[maximum depth reached]
),
'ENSMUSG00000086484' => array(
[maximum depth reached]
),
'ENSMUSG00000086904' => array(
[maximum depth reached]
),
'ENSMUSG00000087461' => array(
[maximum depth reached]
),
'ENSMUSG00000089596' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Breast',
(int) 19 => 'Lung',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Brain',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Bladder',
(int) 51 => 'Brain',
(int) 52 => 'Liver',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Brain',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Breast',
(int) 89 => 'Liver',
(int) 90 => 'Testis',
(int) 91 => 'Liver',
(int) 92 => 'Brain',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Adrenal',
(int) 96 => 'Bladder',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Muscle',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Adrenal',
(int) 107 => 'Breast',
(int) 108 => 'Liver',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Bladder',
(int) 112 => 'Brain',
(int) 113 => 'Breast',
(int) 114 => 'Colon',
(int) 115 => 'Heart',
(int) 116 => 'Liver',
(int) 117 => 'Lung',
(int) 118 => 'Muscle',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Brain',
(int) 123 => 'Placenta',
(int) 124 => 'Adipose',
(int) 125 => 'Bladder',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Bladder',
(int) 140 => 'Colon',
(int) 141 => 'Kidney',
(int) 142 => 'Liver',
(int) 143 => 'Lung',
(int) 144 => 'Ovary',
(int) 145 => 'Placenta',
(int) 146 => 'Testis',
(int) 147 => 'Brain',
(int) 148 => 'Breast',
(int) 149 => 'Colon',
(int) 150 => 'Heart',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Muscle',
(int) 154 => 'Adrenal',
(int) 155 => 'Breast',
(int) 156 => 'Ovary',
(int) 157 => 'Adipose',
(int) 158 => 'Brain',
(int) 159 => 'Breast',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Lung',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Adrenal',
(int) 166 => 'Brain',
(int) 167 => 'Breast',
(int) 168 => 'Colon',
(int) 169 => 'Heart',
(int) 170 => 'Liver',
(int) 171 => 'Lung',
(int) 172 => 'Ovary',
(int) 173 => 'Placenta',
(int) 174 => 'Testis',
(int) 175 => 'Adipose',
(int) 176 => 'Adrenal',
(int) 177 => 'Brain',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Ovary',
(int) 184 => 'Testis',
(int) 185 => 'Adipose',
(int) 186 => 'Bladder',
(int) 187 => 'Brain',
(int) 188 => 'Breast',
(int) 189 => 'Colon',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Ovary',
(int) 194 => 'Testis',
(int) 195 => 'Adipose',
(int) 196 => 'Adrenal',
(int) 197 => 'Bladder',
(int) 198 => 'Brain',
(int) 199 => 'Breast',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Muscle',
(int) 205 => 'Ovary',
(int) 206 => 'Placenta',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Bladder',
(int) 210 => 'Brain',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Heart',
(int) 214 => 'Kidney',
(int) 215 => 'Liver',
(int) 216 => 'Lung',
(int) 217 => 'Ovary',
(int) 218 => 'Placenta',
(int) 219 => 'Testis',
(int) 220 => 'Liver',
(int) 221 => 'Liver',
(int) 222 => 'Ovary',
(int) 223 => 'Liver',
(int) 224 => 'Ovary'
)
),
'CIL_0007LN_0006' => array(
'genes_in_region' => array(
'ENSDARG00000013615' => array(
[maximum depth reached]
),
'ENSDARG00000079478' => array(
[maximum depth reached]
),
'ENSDARG00000094865' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Brain',
(int) 18 => 'Kidney',
(int) 19 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000119487' => 'mitogen-activated protein kinase associated protein 1',
'ENSG00000167081' => 'pre-B-cell leukemia homeobox 3',
'ENSG00000196814' => 'multivesicular body subunit 12B',
'ENSG00000214761' => 'heterogeneous nuclear ribonucleoprotein A1 pseudogene 15',
'ENSG00000227068' => null,
'ENSG00000228392' => null,
'ENSG00000229582' => null,
'ENSG00000232413' => null,
'ENSG00000243845' => 'RNA, 7SL, cytoplasmic 30, pseudogene',
'ENSG00000252985' => 'Small nucleolar RNA SNORD116',
'ENSG00000253079' => 'non-protein coding RNA, repressor of NFAT',
'ENSG00000274510' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000038696' => 'mitogen-activated protein kinase associated protein 1',
'ENSMUSG00000038718' => 'pre B cell leukemia homeobox 3',
'ENSMUSG00000038740' => 'multivesicular body subunit 12B',
'ENSMUSG00000081992' => 'predicted gene 13408',
'ENSMUSG00000083233' => 'predicted gene 13406',
'ENSMUSG00000083503' => 'predicted gene 13407',
'ENSMUSG00000084908' => 'expressed sequence C79798',
'ENSMUSG00000085987' => 'predicted gene 13403',
'ENSMUSG00000086484' => 'non-protein coding RNA, repressor of NFAT',
'ENSMUSG00000086904' => 'predicted gene 13404',
'ENSMUSG00000087461' => 'RIKEN cDNA C230014O12 gene',
'ENSMUSG00000089596' => 'non-protein coding RNA, repressor of NFAT',
'ENSDARG00000013615' => 'pre-B-cell leukemia transcription factor 3b',
'ENSDARG00000079478' => 'multivesicular body subunit 12Bb',
'ENSDARG00000089760' => '5S ribosomal RNA',
'ENSDARG00000094865' => 'si:ch211-244l7.1'
)
$gene_name_arr = array(
'ENSG00000119487' => 'MAPKAP1',
'ENSG00000167081' => 'PBX3',
'ENSG00000196814' => 'MVB12B',
'ENSG00000214761' => 'HNRNPA1P15',
'ENSG00000227068' => 'RP11-12A16.3',
'ENSG00000228392' => 'RP11-343J18.1',
'ENSG00000229582' => 'RP11-423C15.3',
'ENSG00000232413' => 'RP11-343J18.2',
'ENSG00000243845' => 'RN7SL30P',
'ENSG00000252985' => 'SNORD116',
'ENSG00000253079' => 'NRON',
'ENSG00000274510' => 'Metazoa_SRP',
'ENSMUSG00000038696' => 'Mapkap1',
'ENSMUSG00000038718' => 'Pbx3',
'ENSMUSG00000038740' => 'Mvb12b',
'ENSMUSG00000081992' => 'Gm13408',
'ENSMUSG00000083233' => 'Gm13406',
'ENSMUSG00000083503' => 'Gm13407',
'ENSMUSG00000084908' => 'C79798',
'ENSMUSG00000085987' => 'Gm13403',
'ENSMUSG00000086484' => 'Nron',
'ENSMUSG00000086904' => 'Gm13404',
'ENSMUSG00000087461' => 'C230014O12Rik',
'ENSMUSG00000089596' => 'Nron',
'ENSDARG00000013615' => 'pbx3b',
'ENSDARG00000079478' => 'mvb12bb',
'ENSDARG00000089760' => '5S_rRNA',
'ENSDARG00000094865' => 'si:ch211-244l7.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0001',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '125397521',
'seq_end' => '126491100',
'region_length' => '1093579',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0002',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '33746984',
'seq_end' => '34647960',
'region_length' => '900976',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0003',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '12880404',
'seq_end' => '12884283',
'region_length' => '3879',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0004',
'tax_id' => '7955',
'chromosome' => '4',
'seq_start' => '61051473',
'seq_end' => '61052030',
'region_length' => '557',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0005',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '5340313',
'seq_end' => '5340565',
'region_length' => '252',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0006',
'tax_id' => '7955',
'chromosome' => '8',
'seq_start' => '34274736',
'seq_end' => '35059929',
'region_length' => '785193',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 68 => 'Brain',
(int) 106 => 'Breast',
(int) 143 => 'Colon',
(int) 170 => 'Heart',
(int) 197 => 'Kidney',
(int) 233 => 'Liver',
(int) 278 => 'Lung',
(int) 310 => 'Muscle',
(int) 337 => 'Ovary',
(int) 378 => 'Placenta',
(int) 408 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 103
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000265960' => array(
'start' => '125437394',
'end' => '125707234',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-201'
),
'ENST00000350766' => array(
'start' => '125437394',
'end' => '125707203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-007'
),
'ENST00000373496' => array(
'start' => '125657669',
'end' => '125707198',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-012'
),
'ENST00000373498' => array(
'start' => '125437394',
'end' => '125672643',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-009'
),
'ENST00000373503' => array(
'start' => '125437394',
'end' => '125707212',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-008'
),
'ENST00000373511' => array(
'start' => '125437393',
'end' => '125707231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-015'
),
'ENST00000394060' => array(
'start' => '125521468',
'end' => '125707231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-003'
),
'ENST00000394063' => array(
'start' => '125437394',
'end' => '125707234',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-202'
),
'ENST00000420643' => array(
'start' => '125444501',
'end' => '125650417',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-005'
),
'ENST00000427078' => array(
'start' => '125543059',
'end' => '125707177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-013'
),
'ENST00000433483' => array(
'start' => '125669887',
'end' => '125707202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-006'
),
'ENST00000437973' => array(
'start' => '125559114',
'end' => '125585627',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-010'
),
'ENST00000444226' => array(
'start' => '125438469',
'end' => '125484501',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-004'
),
'ENST00000448439' => array(
'start' => '125565366',
'end' => '125669845',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-011'
),
'ENST00000468896' => array(
'start' => '125559783',
'end' => '125657710',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-014'
),
'ENST00000473837' => array(
'start' => '125505944',
'end' => '125650461',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MAPKAP1-017'
),
'ENST00000483937' => array(
'start' => '125438469',
'end' => '125471905',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-001'
),
'ENST00000496063' => array(
'start' => '125438813',
'end' => '125506366',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-018'
),
'ENST00000496658' => array(
'start' => '125438707',
'end' => '125451101',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-002'
),
'ENST00000497932' => array(
'start' => '125438655',
'end' => '125595646',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MAPKAP1-016'
),
'ENST00000342287' => array(
'start' => '125747345',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-001'
),
'ENST00000373482' => array(
'start' => '125747454',
'end' => '125965990',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PBX3-010'
),
'ENST00000373487' => array(
'start' => '125747374',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-007'
),
'ENST00000373489' => array(
'start' => '125747438',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-006'
),
'ENST00000373492' => array(
'start' => '125747454',
'end' => '125965923',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PBX3-005'
),
'ENST00000428092' => array(
'start' => '125865271',
'end' => '125935531',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-008'
),
'ENST00000447726' => array(
'start' => '125748199',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-002'
),
'ENST00000491160' => array(
'start' => '125843735',
'end' => '125915869',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-014'
),
'ENST00000491787' => array(
'start' => '125748182',
'end' => '125929845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-009'
),
'ENST00000492314' => array(
'start' => '125748931',
'end' => '125749537',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PBX3-004'
),
'ENST00000497091' => array(
'start' => '125747374',
'end' => '125797465',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-003'
),
'ENST00000538998' => array(
'start' => '125843713',
'end' => '125965940',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-013'
),
'ENST00000361171' => array(
'start' => '126326849',
'end' => '126507041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MVB12B-001'
),
'ENST00000402437' => array(
'start' => '126335219',
'end' => '126395697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MVB12B-004'
),
'ENST00000470567' => array(
'start' => '126395640',
'end' => '126448409',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-006'
),
'ENST00000485886' => array(
'start' => '126480813',
'end' => '126507041',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-003'
),
'ENST00000489570' => array(
'start' => '126421854',
'end' => '126448409',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-005'
),
'ENST00000489637' => array(
'start' => '126326862',
'end' => '126397633',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-002'
),
'ENST00000444886' => array(
'start' => '125595669',
'end' => '125596628',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HNRNPA1P15-001'
),
'ENST00000437097' => array(
'start' => '125567579',
'end' => '125573023',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-12A16.3-001'
),
'ENST00000419853' => array(
'start' => '126270121',
'end' => '126275918',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-343J18.1-001'
),
'ENST00000444800' => array(
'start' => '125743754',
'end' => '125745740',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-423C15.3-002'
),
'ENST00000606827' => array(
'start' => '125744347',
'end' => '125746552',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP11-423C15.3-001'
),
'ENST00000614664' => array(
'start' => '125744377',
'end' => '125746552',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RP11-423C15.3-201'
),
'ENST00000441473' => array(
'start' => '126057580',
'end' => '126159613',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-343J18.2-001'
),
'ENST00000488416' => array(
'start' => '125512902',
'end' => '125513207',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL30P-201'
),
'ENST00000517176' => array(
'start' => '126426893',
'end' => '126426970',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORD116.1-203'
),
'ENST00000517270' => array(
'start' => '126408041',
'end' => '126408410',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'NRON-201'
),
'ENST00000618720' => array(
'start' => '125417305',
'end' => '125417586',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-283'
),
'ENSMUST00000040459' => array(
'start' => '34406952',
'end' => '34623533',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-002'
),
'ENSMUST00000113123' => array(
'start' => '34406886',
'end' => '34623564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-005'
),
'ENSMUST00000113124' => array(
'start' => '34406878',
'end' => '34623564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-004'
),
'ENSMUST00000113126' => array(
'start' => '34432025',
'end' => '34624950',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-201'
),
'ENSMUST00000124443' => array(
'start' => '34406862',
'end' => '34623475',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-003'
),
'ENSMUST00000129633' => array(
'start' => '34619582',
'end' => '34623919',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-011'
),
'ENSMUST00000137021' => array(
'start' => '34444347',
'end' => '34497873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-006'
),
'ENSMUST00000138933' => array(
'start' => '34438494',
'end' => '34533898',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-009'
),
'ENSMUST00000141253' => array(
'start' => '34406869',
'end' => '34432132',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-008'
),
'ENSMUST00000147337' => array(
'start' => '34407183',
'end' => '34624949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-001'
),
'ENSMUST00000149383' => array(
'start' => '34406771',
'end' => '34444408',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-007'
),
'ENSMUST00000156967' => array(
'start' => '34406872',
'end' => '34478768',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-010'
),
'ENSMUST00000040638' => array(
'start' => '34171723',
'end' => '34372044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-001'
),
'ENSMUST00000113132' => array(
'start' => '34171457',
'end' => '34372038',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-002'
),
'ENSMUST00000127353' => array(
'start' => '34224534',
'end' => '34371150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-008'
),
'ENSMUST00000138021' => array(
'start' => '34213400',
'end' => '34373142',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-007'
),
'ENSMUST00000141653' => array(
'start' => '34224407',
'end' => '34371253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-009'
),
'ENSMUST00000143776' => array(
'start' => '34172881',
'end' => '34371920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-004'
),
'ENSMUST00000153278' => array(
'start' => '34172881',
'end' => '34371920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-003'
),
'ENSMUST00000155423' => array(
'start' => '34368112',
'end' => '34371792',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pbx3-005'
),
'ENSMUST00000175855' => array(
'start' => '34176859',
'end' => '34370846',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-006'
),
'ENSMUST00000176213' => array(
'start' => '34172873',
'end' => '34288852',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pbx3-010'
),
'ENSMUST00000041555' => array(
'start' => '33729953',
'end' => '33887946',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mvb12b-001'
),
'ENSMUST00000146892' => array(
'start' => '33873614',
'end' => '33887482',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mvb12b-003'
),
'ENSMUST00000148660' => array(
'start' => '33825048',
'end' => '33886845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mvb12b-002'
),
'ENSMUST00000119822' => array(
'start' => '34564999',
'end' => '34565796',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13408-001'
),
'ENSMUST00000121991' => array(
'start' => '34436327',
'end' => '34436582',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13406-001'
),
'ENSMUST00000118256' => array(
'start' => '34412988',
'end' => '34413347',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13407-001'
),
'ENSMUST00000131588' => array(
'start' => '34287771',
'end' => '34304440',
'transcript_biotype' => 'antisense',
'transcript_name' => 'C79798-001'
),
'ENSMUST00000127936' => array(
'start' => '33935788',
'end' => '33942113',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-001'
),
'ENSMUST00000130988' => array(
'start' => '33938758',
'end' => '33942111',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-003'
),
'ENSMUST00000134271' => array(
'start' => '33937895',
'end' => '33942145',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-002'
),
'ENSMUST00000140412' => array(
'start' => '33805859',
'end' => '33811438',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-003'
),
'ENSMUST00000151761' => array(
'start' => '33805828',
'end' => '33812455',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-002'
),
'ENSMUST00000156297' => array(
'start' => '33805816',
'end' => '33813591',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-001'
),
'ENSMUST00000156633' => array(
'start' => '33978246',
'end' => '33980324',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13404-001'
),
'ENSMUST00000134921' => array(
'start' => '34018289',
'end' => '34107729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-001'
),
'ENSMUST00000147871' => array(
'start' => '34097397',
'end' => '34111444',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-003'
),
'ENSMUST00000149707' => array(
'start' => '34100044',
'end' => '34107735',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-002'
),
'ENSMUST00000158971' => array(
'start' => '33812957',
'end' => '33813326',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Nron-201'
),
'ENSDART00000040126' => array(
'start' => '34751710',
'end' => '34779303',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-201'
),
'ENSDART00000048994' => array(
'start' => '34751686',
'end' => '34783842',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-202'
),
'ENSDART00000098822' => array(
'start' => '34751686',
'end' => '34906339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-203'
),
'ENSDART00000105204' => array(
'start' => '34751686',
'end' => '34906339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-204'
),
'ENSDART00000134426' => array(
'start' => '34761168',
'end' => '34764858',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-006'
),
'ENSDART00000134681' => array(
'start' => '34761203',
'end' => '34772157',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-004'
),
'ENSDART00000138048' => array(
'start' => '34761168',
'end' => '34773368',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-003'
),
'ENSDART00000140712' => array(
'start' => '34761168',
'end' => '34767772',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-005'
),
'ENSDART00000147444' => array(
'start' => '34761168',
'end' => '34779302',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-002'
),
'ENSDART00000109600' => array(
'start' => '34269261',
'end' => '34408468',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mvb12bb-201'
),
'ENSDART00000138921' => array(
'start' => '34268719',
'end' => '34417006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mvb12bb-001'
),
'ENSDART00000124675' => array(
'start' => '34631480',
'end' => '34631596',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1798-201'
),
'ENSDART00000134904' => array(
'start' => '34505133',
'end' => '34524831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-244l7.1-001'
),
'ENSDART00000156506' => array(
'start' => '34470446',
'end' => '34524834',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-244l7.1-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LN_0001' => array(
'genes_in_region' => array(
'ENSG00000119487' => array(
[maximum depth reached]
),
'ENSG00000167081' => array(
[maximum depth reached]
),
'ENSG00000196814' => array(
[maximum depth reached]
),
'ENSG00000214761' => array(
[maximum depth reached]
),
'ENSG00000227068' => array(
[maximum depth reached]
),
'ENSG00000228392' => array(
[maximum depth reached]
),
'ENSG00000229582' => array(
[maximum depth reached]
),
'ENSG00000243845' => array(
[maximum depth reached]
),
'ENSG00000253079' => array(
[maximum depth reached]
),
'ENSG00000274510' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Bladder',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adrenal',
(int) 41 => 'Kidney',
(int) 42 => 'Ovary',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Testis',
(int) 53 => 'Colon',
(int) 54 => 'Muscle',
(int) 55 => 'Breast',
(int) 56 => 'Muscle',
(int) 57 => 'Bladder',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Liver',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Muscle',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Breast',
(int) 77 => 'Liver',
(int) 78 => 'Liver',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Liver',
(int) 85 => 'Lung',
(int) 86 => 'Muscle',
(int) 87 => 'Ovary',
(int) 88 => 'Placenta',
(int) 89 => 'Testis',
(int) 90 => 'Lung',
(int) 91 => 'Muscle',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Liver',
(int) 95 => 'Lung',
(int) 96 => 'Brain',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Liver',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Ovary',
(int) 115 => 'Adipose',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Bladder',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Colon',
(int) 124 => 'Heart',
(int) 125 => 'Kidney',
(int) 126 => 'Liver',
(int) 127 => 'Lung',
(int) 128 => 'Muscle',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Ovary',
(int) 133 => 'Testis',
(int) 134 => 'Breast',
(int) 135 => 'Lung',
(int) 136 => 'Ovary',
(int) 137 => 'Breast',
(int) 138 => 'Colon',
(int) 139 => 'Kidney',
(int) 140 => 'Liver',
(int) 141 => 'Adipose',
(int) 142 => 'Adrenal',
(int) 143 => 'Breast',
(int) 144 => 'Colon',
(int) 145 => 'Heart',
(int) 146 => 'Kidney',
(int) 147 => 'Liver',
(int) 148 => 'Lung',
(int) 149 => 'Ovary',
(int) 150 => 'Placenta',
(int) 151 => 'Testis',
(int) 152 => 'Adipose',
(int) 153 => 'Adrenal',
(int) 154 => 'Bladder',
(int) 155 => 'Brain',
(int) 156 => 'Breast',
(int) 157 => 'Colon',
(int) 158 => 'Kidney',
(int) 159 => 'Liver',
(int) 160 => 'Lung',
(int) 161 => 'Ovary',
(int) 162 => 'Placenta',
(int) 163 => 'Testis',
(int) 164 => 'Adrenal',
(int) 165 => 'Brain',
(int) 166 => 'Breast',
(int) 167 => 'Lung',
(int) 168 => 'Testis',
(int) 169 => 'Placenta',
(int) 170 => 'Testis',
(int) 171 => 'Colon',
(int) 172 => 'Liver',
(int) 173 => 'Ovary',
(int) 174 => 'Testis',
(int) 175 => 'Adipose',
(int) 176 => 'Adrenal',
(int) 177 => 'Brain',
(int) 178 => 'Breast',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Kidney',
(int) 188 => 'Ovary',
(int) 189 => 'Adipose',
(int) 190 => 'Adrenal',
(int) 191 => 'Brain',
(int) 192 => 'Breast',
(int) 193 => 'Colon',
(int) 194 => 'Heart',
(int) 195 => 'Kidney',
(int) 196 => 'Liver',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Testis'
)
),
'CIL_0007LN_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038696' => array(
[maximum depth reached]
),
'ENSMUSG00000038718' => array(
[maximum depth reached]
),
'ENSMUSG00000038740' => array(
[maximum depth reached]
),
'ENSMUSG00000081992' => array(
[maximum depth reached]
),
'ENSMUSG00000083233' => array(
[maximum depth reached]
),
'ENSMUSG00000083503' => array(
[maximum depth reached]
),
'ENSMUSG00000084908' => array(
[maximum depth reached]
),
'ENSMUSG00000085987' => array(
[maximum depth reached]
),
'ENSMUSG00000086484' => array(
[maximum depth reached]
),
'ENSMUSG00000086904' => array(
[maximum depth reached]
),
'ENSMUSG00000087461' => array(
[maximum depth reached]
),
'ENSMUSG00000089596' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Breast',
(int) 19 => 'Lung',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Brain',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Bladder',
(int) 51 => 'Brain',
(int) 52 => 'Liver',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Brain',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Breast',
(int) 89 => 'Liver',
(int) 90 => 'Testis',
(int) 91 => 'Liver',
(int) 92 => 'Brain',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Adrenal',
(int) 96 => 'Bladder',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Muscle',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Adrenal',
(int) 107 => 'Breast',
(int) 108 => 'Liver',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Bladder',
(int) 112 => 'Brain',
(int) 113 => 'Breast',
(int) 114 => 'Colon',
(int) 115 => 'Heart',
(int) 116 => 'Liver',
(int) 117 => 'Lung',
(int) 118 => 'Muscle',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Brain',
(int) 123 => 'Placenta',
(int) 124 => 'Adipose',
(int) 125 => 'Bladder',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Bladder',
(int) 140 => 'Colon',
(int) 141 => 'Kidney',
(int) 142 => 'Liver',
(int) 143 => 'Lung',
(int) 144 => 'Ovary',
(int) 145 => 'Placenta',
(int) 146 => 'Testis',
(int) 147 => 'Brain',
(int) 148 => 'Breast',
(int) 149 => 'Colon',
(int) 150 => 'Heart',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Muscle',
(int) 154 => 'Adrenal',
(int) 155 => 'Breast',
(int) 156 => 'Ovary',
(int) 157 => 'Adipose',
(int) 158 => 'Brain',
(int) 159 => 'Breast',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Lung',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Adrenal',
(int) 166 => 'Brain',
(int) 167 => 'Breast',
(int) 168 => 'Colon',
(int) 169 => 'Heart',
(int) 170 => 'Liver',
(int) 171 => 'Lung',
(int) 172 => 'Ovary',
(int) 173 => 'Placenta',
(int) 174 => 'Testis',
(int) 175 => 'Adipose',
(int) 176 => 'Adrenal',
(int) 177 => 'Brain',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Ovary',
(int) 184 => 'Testis',
(int) 185 => 'Adipose',
(int) 186 => 'Bladder',
(int) 187 => 'Brain',
(int) 188 => 'Breast',
(int) 189 => 'Colon',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Ovary',
(int) 194 => 'Testis',
(int) 195 => 'Adipose',
(int) 196 => 'Adrenal',
(int) 197 => 'Bladder',
(int) 198 => 'Brain',
(int) 199 => 'Breast',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Muscle',
(int) 205 => 'Ovary',
(int) 206 => 'Placenta',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Bladder',
(int) 210 => 'Brain',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Heart',
(int) 214 => 'Kidney',
(int) 215 => 'Liver',
(int) 216 => 'Lung',
(int) 217 => 'Ovary',
(int) 218 => 'Placenta',
(int) 219 => 'Testis',
(int) 220 => 'Liver',
(int) 221 => 'Liver',
(int) 222 => 'Ovary',
(int) 223 => 'Liver',
(int) 224 => 'Ovary'
)
),
'CIL_0007LN_0006' => array(
'genes_in_region' => array(
'ENSDARG00000013615' => array(
[maximum depth reached]
),
'ENSDARG00000079478' => array(
[maximum depth reached]
),
'ENSDARG00000094865' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Brain',
(int) 18 => 'Kidney',
(int) 19 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0003',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '12880404',
'seq_end' => '12884283',
'region_length' => '3879',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
)
$gene_el = array(
'ENSMUST00000158971' => array(
'Liver' => array(
'average_FPKM' => '0.063',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.123',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000089596'
$is_first = false
$tran_el = array(
'Liver' => array(
'average_FPKM' => '0.063',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.123',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000158971'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LN_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LN_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LN_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000119487' => 'mitogen-activated protein kinase associated protein 1',
'ENSG00000167081' => 'pre-B-cell leukemia homeobox 3',
'ENSG00000196814' => 'multivesicular body subunit 12B',
'ENSG00000214761' => 'heterogeneous nuclear ribonucleoprotein A1 pseudogene 15',
'ENSG00000227068' => null,
'ENSG00000228392' => null,
'ENSG00000229582' => null,
'ENSG00000232413' => null,
'ENSG00000243845' => 'RNA, 7SL, cytoplasmic 30, pseudogene',
'ENSG00000252985' => 'Small nucleolar RNA SNORD116',
'ENSG00000253079' => 'non-protein coding RNA, repressor of NFAT',
'ENSG00000274510' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000038696' => 'mitogen-activated protein kinase associated protein 1',
'ENSMUSG00000038718' => 'pre B cell leukemia homeobox 3',
'ENSMUSG00000038740' => 'multivesicular body subunit 12B',
'ENSMUSG00000081992' => 'predicted gene 13408',
'ENSMUSG00000083233' => 'predicted gene 13406',
'ENSMUSG00000083503' => 'predicted gene 13407',
'ENSMUSG00000084908' => 'expressed sequence C79798',
'ENSMUSG00000085987' => 'predicted gene 13403',
'ENSMUSG00000086484' => 'non-protein coding RNA, repressor of NFAT',
'ENSMUSG00000086904' => 'predicted gene 13404',
'ENSMUSG00000087461' => 'RIKEN cDNA C230014O12 gene',
'ENSMUSG00000089596' => 'non-protein coding RNA, repressor of NFAT',
'ENSDARG00000013615' => 'pre-B-cell leukemia transcription factor 3b',
'ENSDARG00000079478' => 'multivesicular body subunit 12Bb',
'ENSDARG00000089760' => '5S ribosomal RNA',
'ENSDARG00000094865' => 'si:ch211-244l7.1'
),
'gene_name_arr' => array(
'ENSG00000119487' => 'MAPKAP1',
'ENSG00000167081' => 'PBX3',
'ENSG00000196814' => 'MVB12B',
'ENSG00000214761' => 'HNRNPA1P15',
'ENSG00000227068' => 'RP11-12A16.3',
'ENSG00000228392' => 'RP11-343J18.1',
'ENSG00000229582' => 'RP11-423C15.3',
'ENSG00000232413' => 'RP11-343J18.2',
'ENSG00000243845' => 'RN7SL30P',
'ENSG00000252985' => 'SNORD116',
'ENSG00000253079' => 'NRON',
'ENSG00000274510' => 'Metazoa_SRP',
'ENSMUSG00000038696' => 'Mapkap1',
'ENSMUSG00000038718' => 'Pbx3',
'ENSMUSG00000038740' => 'Mvb12b',
'ENSMUSG00000081992' => 'Gm13408',
'ENSMUSG00000083233' => 'Gm13406',
'ENSMUSG00000083503' => 'Gm13407',
'ENSMUSG00000084908' => 'C79798',
'ENSMUSG00000085987' => 'Gm13403',
'ENSMUSG00000086484' => 'Nron',
'ENSMUSG00000086904' => 'Gm13404',
'ENSMUSG00000087461' => 'C230014O12Rik',
'ENSMUSG00000089596' => 'Nron',
'ENSDARG00000013615' => 'pbx3b',
'ENSDARG00000079478' => 'mvb12bb',
'ENSDARG00000089760' => '5S_rRNA',
'ENSDARG00000094865' => 'si:ch211-244l7.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 4 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 5 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 68 => 'Brain',
(int) 106 => 'Breast',
(int) 143 => 'Colon',
(int) 170 => 'Heart',
(int) 197 => 'Kidney',
(int) 233 => 'Liver',
(int) 278 => 'Lung',
(int) 310 => 'Muscle',
(int) 337 => 'Ovary',
(int) 378 => 'Placenta',
(int) 408 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 103,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000265960' => array(
'start' => '125437394',
'end' => '125707234',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-201'
),
'ENST00000350766' => array(
'start' => '125437394',
'end' => '125707203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-007'
),
'ENST00000373496' => array(
'start' => '125657669',
'end' => '125707198',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-012'
),
'ENST00000373498' => array(
'start' => '125437394',
'end' => '125672643',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-009'
),
'ENST00000373503' => array(
'start' => '125437394',
'end' => '125707212',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-008'
),
'ENST00000373511' => array(
'start' => '125437393',
'end' => '125707231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-015'
),
'ENST00000394060' => array(
'start' => '125521468',
'end' => '125707231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-003'
),
'ENST00000394063' => array(
'start' => '125437394',
'end' => '125707234',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-202'
),
'ENST00000420643' => array(
'start' => '125444501',
'end' => '125650417',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-005'
),
'ENST00000427078' => array(
'start' => '125543059',
'end' => '125707177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-013'
),
'ENST00000433483' => array(
'start' => '125669887',
'end' => '125707202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-006'
),
'ENST00000437973' => array(
'start' => '125559114',
'end' => '125585627',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-010'
),
'ENST00000444226' => array(
'start' => '125438469',
'end' => '125484501',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-004'
),
'ENST00000448439' => array(
'start' => '125565366',
'end' => '125669845',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-011'
),
'ENST00000468896' => array(
'start' => '125559783',
'end' => '125657710',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-014'
),
'ENST00000473837' => array(
'start' => '125505944',
'end' => '125650461',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MAPKAP1-017'
),
'ENST00000483937' => array(
'start' => '125438469',
'end' => '125471905',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-001'
),
'ENST00000496063' => array(
'start' => '125438813',
'end' => '125506366',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-018'
),
'ENST00000496658' => array(
'start' => '125438707',
'end' => '125451101',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-002'
),
'ENST00000497932' => array(
'start' => '125438655',
'end' => '125595646',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MAPKAP1-016'
),
'ENST00000342287' => array(
'start' => '125747345',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-001'
),
'ENST00000373482' => array(
'start' => '125747454',
'end' => '125965990',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PBX3-010'
),
'ENST00000373487' => array(
'start' => '125747374',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-007'
),
'ENST00000373489' => array(
'start' => '125747438',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-006'
),
'ENST00000373492' => array(
'start' => '125747454',
'end' => '125965923',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PBX3-005'
),
'ENST00000428092' => array(
'start' => '125865271',
'end' => '125935531',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-008'
),
'ENST00000447726' => array(
'start' => '125748199',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-002'
),
'ENST00000491160' => array(
'start' => '125843735',
'end' => '125915869',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-014'
),
'ENST00000491787' => array(
'start' => '125748182',
'end' => '125929845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-009'
),
'ENST00000492314' => array(
'start' => '125748931',
'end' => '125749537',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PBX3-004'
),
'ENST00000497091' => array(
'start' => '125747374',
'end' => '125797465',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-003'
),
'ENST00000538998' => array(
'start' => '125843713',
'end' => '125965940',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-013'
),
'ENST00000361171' => array(
'start' => '126326849',
'end' => '126507041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MVB12B-001'
),
'ENST00000402437' => array(
'start' => '126335219',
'end' => '126395697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MVB12B-004'
),
'ENST00000470567' => array(
'start' => '126395640',
'end' => '126448409',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-006'
),
'ENST00000485886' => array(
'start' => '126480813',
'end' => '126507041',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-003'
),
'ENST00000489570' => array(
'start' => '126421854',
'end' => '126448409',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-005'
),
'ENST00000489637' => array(
'start' => '126326862',
'end' => '126397633',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-002'
),
'ENST00000444886' => array(
'start' => '125595669',
'end' => '125596628',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HNRNPA1P15-001'
),
'ENST00000437097' => array(
'start' => '125567579',
'end' => '125573023',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-12A16.3-001'
),
'ENST00000419853' => array(
'start' => '126270121',
'end' => '126275918',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-343J18.1-001'
),
'ENST00000444800' => array(
'start' => '125743754',
'end' => '125745740',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-423C15.3-002'
),
'ENST00000606827' => array(
'start' => '125744347',
'end' => '125746552',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP11-423C15.3-001'
),
'ENST00000614664' => array(
'start' => '125744377',
'end' => '125746552',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RP11-423C15.3-201'
),
'ENST00000441473' => array(
'start' => '126057580',
'end' => '126159613',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-343J18.2-001'
),
'ENST00000488416' => array(
'start' => '125512902',
'end' => '125513207',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL30P-201'
),
'ENST00000517176' => array(
'start' => '126426893',
'end' => '126426970',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORD116.1-203'
),
'ENST00000517270' => array(
'start' => '126408041',
'end' => '126408410',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'NRON-201'
),
'ENST00000618720' => array(
'start' => '125417305',
'end' => '125417586',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-283'
),
'ENSMUST00000040459' => array(
'start' => '34406952',
'end' => '34623533',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-002'
),
'ENSMUST00000113123' => array(
'start' => '34406886',
'end' => '34623564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-005'
),
'ENSMUST00000113124' => array(
'start' => '34406878',
'end' => '34623564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-004'
),
'ENSMUST00000113126' => array(
'start' => '34432025',
'end' => '34624950',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-201'
),
'ENSMUST00000124443' => array(
'start' => '34406862',
'end' => '34623475',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-003'
),
'ENSMUST00000129633' => array(
'start' => '34619582',
'end' => '34623919',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-011'
),
'ENSMUST00000137021' => array(
'start' => '34444347',
'end' => '34497873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-006'
),
'ENSMUST00000138933' => array(
'start' => '34438494',
'end' => '34533898',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-009'
),
'ENSMUST00000141253' => array(
'start' => '34406869',
'end' => '34432132',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-008'
),
'ENSMUST00000147337' => array(
'start' => '34407183',
'end' => '34624949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-001'
),
'ENSMUST00000149383' => array(
'start' => '34406771',
'end' => '34444408',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-007'
),
'ENSMUST00000156967' => array(
'start' => '34406872',
'end' => '34478768',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-010'
),
'ENSMUST00000040638' => array(
'start' => '34171723',
'end' => '34372044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-001'
),
'ENSMUST00000113132' => array(
'start' => '34171457',
'end' => '34372038',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-002'
),
'ENSMUST00000127353' => array(
'start' => '34224534',
'end' => '34371150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-008'
),
'ENSMUST00000138021' => array(
'start' => '34213400',
'end' => '34373142',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-007'
),
'ENSMUST00000141653' => array(
'start' => '34224407',
'end' => '34371253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-009'
),
'ENSMUST00000143776' => array(
'start' => '34172881',
'end' => '34371920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-004'
),
'ENSMUST00000153278' => array(
'start' => '34172881',
'end' => '34371920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-003'
),
'ENSMUST00000155423' => array(
'start' => '34368112',
'end' => '34371792',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pbx3-005'
),
'ENSMUST00000175855' => array(
'start' => '34176859',
'end' => '34370846',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-006'
),
'ENSMUST00000176213' => array(
'start' => '34172873',
'end' => '34288852',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pbx3-010'
),
'ENSMUST00000041555' => array(
'start' => '33729953',
'end' => '33887946',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mvb12b-001'
),
'ENSMUST00000146892' => array(
'start' => '33873614',
'end' => '33887482',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mvb12b-003'
),
'ENSMUST00000148660' => array(
'start' => '33825048',
'end' => '33886845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mvb12b-002'
),
'ENSMUST00000119822' => array(
'start' => '34564999',
'end' => '34565796',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13408-001'
),
'ENSMUST00000121991' => array(
'start' => '34436327',
'end' => '34436582',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13406-001'
),
'ENSMUST00000118256' => array(
'start' => '34412988',
'end' => '34413347',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13407-001'
),
'ENSMUST00000131588' => array(
'start' => '34287771',
'end' => '34304440',
'transcript_biotype' => 'antisense',
'transcript_name' => 'C79798-001'
),
'ENSMUST00000127936' => array(
'start' => '33935788',
'end' => '33942113',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-001'
),
'ENSMUST00000130988' => array(
'start' => '33938758',
'end' => '33942111',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-003'
),
'ENSMUST00000134271' => array(
'start' => '33937895',
'end' => '33942145',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-002'
),
'ENSMUST00000140412' => array(
'start' => '33805859',
'end' => '33811438',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-003'
),
'ENSMUST00000151761' => array(
'start' => '33805828',
'end' => '33812455',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-002'
),
'ENSMUST00000156297' => array(
'start' => '33805816',
'end' => '33813591',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-001'
),
'ENSMUST00000156633' => array(
'start' => '33978246',
'end' => '33980324',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13404-001'
),
'ENSMUST00000134921' => array(
'start' => '34018289',
'end' => '34107729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-001'
),
'ENSMUST00000147871' => array(
'start' => '34097397',
'end' => '34111444',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-003'
),
'ENSMUST00000149707' => array(
'start' => '34100044',
'end' => '34107735',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-002'
),
'ENSMUST00000158971' => array(
'start' => '33812957',
'end' => '33813326',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Nron-201'
),
'ENSDART00000040126' => array(
'start' => '34751710',
'end' => '34779303',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-201'
),
'ENSDART00000048994' => array(
'start' => '34751686',
'end' => '34783842',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-202'
),
'ENSDART00000098822' => array(
'start' => '34751686',
'end' => '34906339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-203'
),
'ENSDART00000105204' => array(
'start' => '34751686',
'end' => '34906339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-204'
),
'ENSDART00000134426' => array(
'start' => '34761168',
'end' => '34764858',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-006'
),
'ENSDART00000134681' => array(
'start' => '34761203',
'end' => '34772157',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-004'
),
'ENSDART00000138048' => array(
'start' => '34761168',
'end' => '34773368',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-003'
),
'ENSDART00000140712' => array(
'start' => '34761168',
'end' => '34767772',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-005'
),
'ENSDART00000147444' => array(
'start' => '34761168',
'end' => '34779302',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-002'
),
'ENSDART00000109600' => array(
'start' => '34269261',
'end' => '34408468',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mvb12bb-201'
),
'ENSDART00000138921' => array(
'start' => '34268719',
'end' => '34417006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mvb12bb-001'
),
'ENSDART00000124675' => array(
'start' => '34631480',
'end' => '34631596',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1798-201'
),
'ENSDART00000134904' => array(
'start' => '34505133',
'end' => '34524831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-244l7.1-001'
),
'ENSDART00000156506' => array(
'start' => '34470446',
'end' => '34524834',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-244l7.1-002'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LN_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LN_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LN_0006' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LN_0001' => array(
'genes_in_region' => array(
'ENSG00000119487' => array(
[maximum depth reached]
),
'ENSG00000167081' => array(
[maximum depth reached]
),
'ENSG00000196814' => array(
[maximum depth reached]
),
'ENSG00000214761' => array(
[maximum depth reached]
),
'ENSG00000227068' => array(
[maximum depth reached]
),
'ENSG00000228392' => array(
[maximum depth reached]
),
'ENSG00000229582' => array(
[maximum depth reached]
),
'ENSG00000243845' => array(
[maximum depth reached]
),
'ENSG00000253079' => array(
[maximum depth reached]
),
'ENSG00000274510' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Bladder',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adrenal',
(int) 41 => 'Kidney',
(int) 42 => 'Ovary',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Testis',
(int) 53 => 'Colon',
(int) 54 => 'Muscle',
(int) 55 => 'Breast',
(int) 56 => 'Muscle',
(int) 57 => 'Bladder',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Liver',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Muscle',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Breast',
(int) 77 => 'Liver',
(int) 78 => 'Liver',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Liver',
(int) 85 => 'Lung',
(int) 86 => 'Muscle',
(int) 87 => 'Ovary',
(int) 88 => 'Placenta',
(int) 89 => 'Testis',
(int) 90 => 'Lung',
(int) 91 => 'Muscle',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Liver',
(int) 95 => 'Lung',
(int) 96 => 'Brain',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Liver',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Ovary',
(int) 115 => 'Adipose',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Bladder',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Colon',
(int) 124 => 'Heart',
(int) 125 => 'Kidney',
(int) 126 => 'Liver',
(int) 127 => 'Lung',
(int) 128 => 'Muscle',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Ovary',
(int) 133 => 'Testis',
(int) 134 => 'Breast',
(int) 135 => 'Lung',
(int) 136 => 'Ovary',
(int) 137 => 'Breast',
(int) 138 => 'Colon',
(int) 139 => 'Kidney',
(int) 140 => 'Liver',
(int) 141 => 'Adipose',
(int) 142 => 'Adrenal',
(int) 143 => 'Breast',
(int) 144 => 'Colon',
(int) 145 => 'Heart',
(int) 146 => 'Kidney',
(int) 147 => 'Liver',
(int) 148 => 'Lung',
(int) 149 => 'Ovary',
(int) 150 => 'Placenta',
(int) 151 => 'Testis',
(int) 152 => 'Adipose',
(int) 153 => 'Adrenal',
(int) 154 => 'Bladder',
(int) 155 => 'Brain',
(int) 156 => 'Breast',
(int) 157 => 'Colon',
(int) 158 => 'Kidney',
(int) 159 => 'Liver',
(int) 160 => 'Lung',
(int) 161 => 'Ovary',
(int) 162 => 'Placenta',
(int) 163 => 'Testis',
(int) 164 => 'Adrenal',
(int) 165 => 'Brain',
(int) 166 => 'Breast',
(int) 167 => 'Lung',
(int) 168 => 'Testis',
(int) 169 => 'Placenta',
(int) 170 => 'Testis',
(int) 171 => 'Colon',
(int) 172 => 'Liver',
(int) 173 => 'Ovary',
(int) 174 => 'Testis',
(int) 175 => 'Adipose',
(int) 176 => 'Adrenal',
(int) 177 => 'Brain',
(int) 178 => 'Breast',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Kidney',
(int) 188 => 'Ovary',
(int) 189 => 'Adipose',
(int) 190 => 'Adrenal',
(int) 191 => 'Brain',
(int) 192 => 'Breast',
(int) 193 => 'Colon',
(int) 194 => 'Heart',
(int) 195 => 'Kidney',
(int) 196 => 'Liver',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Testis'
)
),
'CIL_0007LN_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038696' => array(
[maximum depth reached]
),
'ENSMUSG00000038718' => array(
[maximum depth reached]
),
'ENSMUSG00000038740' => array(
[maximum depth reached]
),
'ENSMUSG00000081992' => array(
[maximum depth reached]
),
'ENSMUSG00000083233' => array(
[maximum depth reached]
),
'ENSMUSG00000083503' => array(
[maximum depth reached]
),
'ENSMUSG00000084908' => array(
[maximum depth reached]
),
'ENSMUSG00000085987' => array(
[maximum depth reached]
),
'ENSMUSG00000086484' => array(
[maximum depth reached]
),
'ENSMUSG00000086904' => array(
[maximum depth reached]
),
'ENSMUSG00000087461' => array(
[maximum depth reached]
),
'ENSMUSG00000089596' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Breast',
(int) 19 => 'Lung',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Brain',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Bladder',
(int) 51 => 'Brain',
(int) 52 => 'Liver',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Brain',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Breast',
(int) 89 => 'Liver',
(int) 90 => 'Testis',
(int) 91 => 'Liver',
(int) 92 => 'Brain',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Adrenal',
(int) 96 => 'Bladder',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Muscle',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Adrenal',
(int) 107 => 'Breast',
(int) 108 => 'Liver',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Bladder',
(int) 112 => 'Brain',
(int) 113 => 'Breast',
(int) 114 => 'Colon',
(int) 115 => 'Heart',
(int) 116 => 'Liver',
(int) 117 => 'Lung',
(int) 118 => 'Muscle',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Brain',
(int) 123 => 'Placenta',
(int) 124 => 'Adipose',
(int) 125 => 'Bladder',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Bladder',
(int) 140 => 'Colon',
(int) 141 => 'Kidney',
(int) 142 => 'Liver',
(int) 143 => 'Lung',
(int) 144 => 'Ovary',
(int) 145 => 'Placenta',
(int) 146 => 'Testis',
(int) 147 => 'Brain',
(int) 148 => 'Breast',
(int) 149 => 'Colon',
(int) 150 => 'Heart',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Muscle',
(int) 154 => 'Adrenal',
(int) 155 => 'Breast',
(int) 156 => 'Ovary',
(int) 157 => 'Adipose',
(int) 158 => 'Brain',
(int) 159 => 'Breast',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Lung',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Adrenal',
(int) 166 => 'Brain',
(int) 167 => 'Breast',
(int) 168 => 'Colon',
(int) 169 => 'Heart',
(int) 170 => 'Liver',
(int) 171 => 'Lung',
(int) 172 => 'Ovary',
(int) 173 => 'Placenta',
(int) 174 => 'Testis',
(int) 175 => 'Adipose',
(int) 176 => 'Adrenal',
(int) 177 => 'Brain',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Ovary',
(int) 184 => 'Testis',
(int) 185 => 'Adipose',
(int) 186 => 'Bladder',
(int) 187 => 'Brain',
(int) 188 => 'Breast',
(int) 189 => 'Colon',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Ovary',
(int) 194 => 'Testis',
(int) 195 => 'Adipose',
(int) 196 => 'Adrenal',
(int) 197 => 'Bladder',
(int) 198 => 'Brain',
(int) 199 => 'Breast',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Muscle',
(int) 205 => 'Ovary',
(int) 206 => 'Placenta',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Bladder',
(int) 210 => 'Brain',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Heart',
(int) 214 => 'Kidney',
(int) 215 => 'Liver',
(int) 216 => 'Lung',
(int) 217 => 'Ovary',
(int) 218 => 'Placenta',
(int) 219 => 'Testis',
(int) 220 => 'Liver',
(int) 221 => 'Liver',
(int) 222 => 'Ovary',
(int) 223 => 'Liver',
(int) 224 => 'Ovary'
)
),
'CIL_0007LN_0006' => array(
'genes_in_region' => array(
'ENSDARG00000013615' => array(
[maximum depth reached]
),
'ENSDARG00000079478' => array(
[maximum depth reached]
),
'ENSDARG00000094865' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Brain',
(int) 18 => 'Kidney',
(int) 19 => 'Kidney'
)
)
)
$gene_desc_arr = array(
'ENSG00000119487' => 'mitogen-activated protein kinase associated protein 1',
'ENSG00000167081' => 'pre-B-cell leukemia homeobox 3',
'ENSG00000196814' => 'multivesicular body subunit 12B',
'ENSG00000214761' => 'heterogeneous nuclear ribonucleoprotein A1 pseudogene 15',
'ENSG00000227068' => null,
'ENSG00000228392' => null,
'ENSG00000229582' => null,
'ENSG00000232413' => null,
'ENSG00000243845' => 'RNA, 7SL, cytoplasmic 30, pseudogene',
'ENSG00000252985' => 'Small nucleolar RNA SNORD116',
'ENSG00000253079' => 'non-protein coding RNA, repressor of NFAT',
'ENSG00000274510' => 'Metazoan signal recognition particle RNA',
'ENSMUSG00000038696' => 'mitogen-activated protein kinase associated protein 1',
'ENSMUSG00000038718' => 'pre B cell leukemia homeobox 3',
'ENSMUSG00000038740' => 'multivesicular body subunit 12B',
'ENSMUSG00000081992' => 'predicted gene 13408',
'ENSMUSG00000083233' => 'predicted gene 13406',
'ENSMUSG00000083503' => 'predicted gene 13407',
'ENSMUSG00000084908' => 'expressed sequence C79798',
'ENSMUSG00000085987' => 'predicted gene 13403',
'ENSMUSG00000086484' => 'non-protein coding RNA, repressor of NFAT',
'ENSMUSG00000086904' => 'predicted gene 13404',
'ENSMUSG00000087461' => 'RIKEN cDNA C230014O12 gene',
'ENSMUSG00000089596' => 'non-protein coding RNA, repressor of NFAT',
'ENSDARG00000013615' => 'pre-B-cell leukemia transcription factor 3b',
'ENSDARG00000079478' => 'multivesicular body subunit 12Bb',
'ENSDARG00000089760' => '5S ribosomal RNA',
'ENSDARG00000094865' => 'si:ch211-244l7.1'
)
$gene_name_arr = array(
'ENSG00000119487' => 'MAPKAP1',
'ENSG00000167081' => 'PBX3',
'ENSG00000196814' => 'MVB12B',
'ENSG00000214761' => 'HNRNPA1P15',
'ENSG00000227068' => 'RP11-12A16.3',
'ENSG00000228392' => 'RP11-343J18.1',
'ENSG00000229582' => 'RP11-423C15.3',
'ENSG00000232413' => 'RP11-343J18.2',
'ENSG00000243845' => 'RN7SL30P',
'ENSG00000252985' => 'SNORD116',
'ENSG00000253079' => 'NRON',
'ENSG00000274510' => 'Metazoa_SRP',
'ENSMUSG00000038696' => 'Mapkap1',
'ENSMUSG00000038718' => 'Pbx3',
'ENSMUSG00000038740' => 'Mvb12b',
'ENSMUSG00000081992' => 'Gm13408',
'ENSMUSG00000083233' => 'Gm13406',
'ENSMUSG00000083503' => 'Gm13407',
'ENSMUSG00000084908' => 'C79798',
'ENSMUSG00000085987' => 'Gm13403',
'ENSMUSG00000086484' => 'Nron',
'ENSMUSG00000086904' => 'Gm13404',
'ENSMUSG00000087461' => 'C230014O12Rik',
'ENSMUSG00000089596' => 'Nron',
'ENSDARG00000013615' => 'pbx3b',
'ENSDARG00000079478' => 'mvb12bb',
'ENSDARG00000089760' => '5S_rRNA',
'ENSDARG00000094865' => 'si:ch211-244l7.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0001',
'tax_id' => '9606',
'chromosome' => '9',
'seq_start' => '125397521',
'seq_end' => '126491100',
'region_length' => '1093579',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0002',
'tax_id' => '10090',
'chromosome' => '2',
'seq_start' => '33746984',
'seq_end' => '34647960',
'region_length' => '900976',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0003',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '12880404',
'seq_end' => '12884283',
'region_length' => '3879',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0004',
'tax_id' => '7955',
'chromosome' => '4',
'seq_start' => '61051473',
'seq_end' => '61052030',
'region_length' => '557',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 4 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0005',
'tax_id' => '7955',
'chromosome' => '5',
'seq_start' => '5340313',
'seq_end' => '5340565',
'region_length' => '252',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
),
(int) 5 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0006',
'tax_id' => '7955',
'chromosome' => '8',
'seq_start' => '34274736',
'seq_end' => '35059929',
'region_length' => '785193',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 25 => 'Adrenal',
(int) 49 => 'Bladder',
(int) 68 => 'Brain',
(int) 106 => 'Breast',
(int) 143 => 'Colon',
(int) 170 => 'Heart',
(int) 197 => 'Kidney',
(int) 233 => 'Liver',
(int) 278 => 'Lung',
(int) 310 => 'Muscle',
(int) 337 => 'Ovary',
(int) 378 => 'Placenta',
(int) 408 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 103
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000265960' => array(
'start' => '125437394',
'end' => '125707234',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-201'
),
'ENST00000350766' => array(
'start' => '125437394',
'end' => '125707203',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-007'
),
'ENST00000373496' => array(
'start' => '125657669',
'end' => '125707198',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-012'
),
'ENST00000373498' => array(
'start' => '125437394',
'end' => '125672643',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-009'
),
'ENST00000373503' => array(
'start' => '125437394',
'end' => '125707212',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-008'
),
'ENST00000373511' => array(
'start' => '125437393',
'end' => '125707231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-015'
),
'ENST00000394060' => array(
'start' => '125521468',
'end' => '125707231',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-003'
),
'ENST00000394063' => array(
'start' => '125437394',
'end' => '125707234',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-202'
),
'ENST00000420643' => array(
'start' => '125444501',
'end' => '125650417',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-005'
),
'ENST00000427078' => array(
'start' => '125543059',
'end' => '125707177',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-013'
),
'ENST00000433483' => array(
'start' => '125669887',
'end' => '125707202',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-006'
),
'ENST00000437973' => array(
'start' => '125559114',
'end' => '125585627',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-010'
),
'ENST00000444226' => array(
'start' => '125438469',
'end' => '125484501',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-004'
),
'ENST00000448439' => array(
'start' => '125565366',
'end' => '125669845',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-011'
),
'ENST00000468896' => array(
'start' => '125559783',
'end' => '125657710',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MAPKAP1-014'
),
'ENST00000473837' => array(
'start' => '125505944',
'end' => '125650461',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'MAPKAP1-017'
),
'ENST00000483937' => array(
'start' => '125438469',
'end' => '125471905',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-001'
),
'ENST00000496063' => array(
'start' => '125438813',
'end' => '125506366',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-018'
),
'ENST00000496658' => array(
'start' => '125438707',
'end' => '125451101',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MAPKAP1-002'
),
'ENST00000497932' => array(
'start' => '125438655',
'end' => '125595646',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'MAPKAP1-016'
),
'ENST00000342287' => array(
'start' => '125747345',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-001'
),
'ENST00000373482' => array(
'start' => '125747454',
'end' => '125965990',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PBX3-010'
),
'ENST00000373487' => array(
'start' => '125747374',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-007'
),
'ENST00000373489' => array(
'start' => '125747438',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-006'
),
'ENST00000373492' => array(
'start' => '125747454',
'end' => '125965923',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'PBX3-005'
),
'ENST00000428092' => array(
'start' => '125865271',
'end' => '125935531',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-008'
),
'ENST00000447726' => array(
'start' => '125748199',
'end' => '125967377',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-002'
),
'ENST00000491160' => array(
'start' => '125843735',
'end' => '125915869',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-014'
),
'ENST00000491787' => array(
'start' => '125748182',
'end' => '125929845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'PBX3-009'
),
'ENST00000492314' => array(
'start' => '125748931',
'end' => '125749537',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'PBX3-004'
),
'ENST00000497091' => array(
'start' => '125747374',
'end' => '125797465',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-003'
),
'ENST00000538998' => array(
'start' => '125843713',
'end' => '125965940',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'PBX3-013'
),
'ENST00000361171' => array(
'start' => '126326849',
'end' => '126507041',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MVB12B-001'
),
'ENST00000402437' => array(
'start' => '126335219',
'end' => '126395697',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'MVB12B-004'
),
'ENST00000470567' => array(
'start' => '126395640',
'end' => '126448409',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-006'
),
'ENST00000485886' => array(
'start' => '126480813',
'end' => '126507041',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-003'
),
'ENST00000489570' => array(
'start' => '126421854',
'end' => '126448409',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-005'
),
'ENST00000489637' => array(
'start' => '126326862',
'end' => '126397633',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'MVB12B-002'
),
'ENST00000444886' => array(
'start' => '125595669',
'end' => '125596628',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'HNRNPA1P15-001'
),
'ENST00000437097' => array(
'start' => '125567579',
'end' => '125573023',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-12A16.3-001'
),
'ENST00000419853' => array(
'start' => '126270121',
'end' => '126275918',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-343J18.1-001'
),
'ENST00000444800' => array(
'start' => '125743754',
'end' => '125745740',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-423C15.3-002'
),
'ENST00000606827' => array(
'start' => '125744347',
'end' => '125746552',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'RP11-423C15.3-001'
),
'ENST00000614664' => array(
'start' => '125744377',
'end' => '125746552',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'RP11-423C15.3-201'
),
'ENST00000441473' => array(
'start' => '126057580',
'end' => '126159613',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-343J18.2-001'
),
'ENST00000488416' => array(
'start' => '125512902',
'end' => '125513207',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'RN7SL30P-201'
),
'ENST00000517176' => array(
'start' => '126426893',
'end' => '126426970',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'SNORD116.1-203'
),
'ENST00000517270' => array(
'start' => '126408041',
'end' => '126408410',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'NRON-201'
),
'ENST00000618720' => array(
'start' => '125417305',
'end' => '125417586',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Metazoa_SRP.1-283'
),
'ENSMUST00000040459' => array(
'start' => '34406952',
'end' => '34623533',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-002'
),
'ENSMUST00000113123' => array(
'start' => '34406886',
'end' => '34623564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-005'
),
'ENSMUST00000113124' => array(
'start' => '34406878',
'end' => '34623564',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-004'
),
'ENSMUST00000113126' => array(
'start' => '34432025',
'end' => '34624950',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-201'
),
'ENSMUST00000124443' => array(
'start' => '34406862',
'end' => '34623475',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-003'
),
'ENSMUST00000129633' => array(
'start' => '34619582',
'end' => '34623919',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-011'
),
'ENSMUST00000137021' => array(
'start' => '34444347',
'end' => '34497873',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-006'
),
'ENSMUST00000138933' => array(
'start' => '34438494',
'end' => '34533898',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-009'
),
'ENSMUST00000141253' => array(
'start' => '34406869',
'end' => '34432132',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-008'
),
'ENSMUST00000147337' => array(
'start' => '34407183',
'end' => '34624949',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mapkap1-001'
),
'ENSMUST00000149383' => array(
'start' => '34406771',
'end' => '34444408',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-007'
),
'ENSMUST00000156967' => array(
'start' => '34406872',
'end' => '34478768',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mapkap1-010'
),
'ENSMUST00000040638' => array(
'start' => '34171723',
'end' => '34372044',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-001'
),
'ENSMUST00000113132' => array(
'start' => '34171457',
'end' => '34372038',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-002'
),
'ENSMUST00000127353' => array(
'start' => '34224534',
'end' => '34371150',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-008'
),
'ENSMUST00000138021' => array(
'start' => '34213400',
'end' => '34373142',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-007'
),
'ENSMUST00000141653' => array(
'start' => '34224407',
'end' => '34371253',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Pbx3-009'
),
'ENSMUST00000143776' => array(
'start' => '34172881',
'end' => '34371920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-004'
),
'ENSMUST00000153278' => array(
'start' => '34172881',
'end' => '34371920',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-003'
),
'ENSMUST00000155423' => array(
'start' => '34368112',
'end' => '34371792',
'transcript_biotype' => 'retained_intron',
'transcript_name' => 'Pbx3-005'
),
'ENSMUST00000175855' => array(
'start' => '34176859',
'end' => '34370846',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'Pbx3-006'
),
'ENSMUST00000176213' => array(
'start' => '34172873',
'end' => '34288852',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Pbx3-010'
),
'ENSMUST00000041555' => array(
'start' => '33729953',
'end' => '33887946',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mvb12b-001'
),
'ENSMUST00000146892' => array(
'start' => '33873614',
'end' => '33887482',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Mvb12b-003'
),
'ENSMUST00000148660' => array(
'start' => '33825048',
'end' => '33886845',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Mvb12b-002'
),
'ENSMUST00000119822' => array(
'start' => '34564999',
'end' => '34565796',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13408-001'
),
'ENSMUST00000121991' => array(
'start' => '34436327',
'end' => '34436582',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13406-001'
),
'ENSMUST00000118256' => array(
'start' => '34412988',
'end' => '34413347',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'Gm13407-001'
),
'ENSMUST00000131588' => array(
'start' => '34287771',
'end' => '34304440',
'transcript_biotype' => 'antisense',
'transcript_name' => 'C79798-001'
),
'ENSMUST00000127936' => array(
'start' => '33935788',
'end' => '33942113',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-001'
),
'ENSMUST00000130988' => array(
'start' => '33938758',
'end' => '33942111',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-003'
),
'ENSMUST00000134271' => array(
'start' => '33937895',
'end' => '33942145',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13403-002'
),
'ENSMUST00000140412' => array(
'start' => '33805859',
'end' => '33811438',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-003'
),
'ENSMUST00000151761' => array(
'start' => '33805828',
'end' => '33812455',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-002'
),
'ENSMUST00000156297' => array(
'start' => '33805816',
'end' => '33813591',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Nron-001'
),
'ENSMUST00000156633' => array(
'start' => '33978246',
'end' => '33980324',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'Gm13404-001'
),
'ENSMUST00000134921' => array(
'start' => '34018289',
'end' => '34107729',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-001'
),
'ENSMUST00000147871' => array(
'start' => '34097397',
'end' => '34111444',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-003'
),
'ENSMUST00000149707' => array(
'start' => '34100044',
'end' => '34107735',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'C230014O12Rik-002'
),
'ENSMUST00000158971' => array(
'start' => '33812957',
'end' => '33813326',
'transcript_biotype' => 'misc_RNA',
'transcript_name' => 'Nron-201'
),
'ENSDART00000040126' => array(
'start' => '34751710',
'end' => '34779303',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-201'
),
'ENSDART00000048994' => array(
'start' => '34751686',
'end' => '34783842',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-202'
),
'ENSDART00000098822' => array(
'start' => '34751686',
'end' => '34906339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-203'
),
'ENSDART00000105204' => array(
'start' => '34751686',
'end' => '34906339',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-204'
),
'ENSDART00000134426' => array(
'start' => '34761168',
'end' => '34764858',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-006'
),
'ENSDART00000134681' => array(
'start' => '34761203',
'end' => '34772157',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-004'
),
'ENSDART00000138048' => array(
'start' => '34761168',
'end' => '34773368',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-003'
),
'ENSDART00000140712' => array(
'start' => '34761168',
'end' => '34767772',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-005'
),
'ENSDART00000147444' => array(
'start' => '34761168',
'end' => '34779302',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'pbx3b-002'
),
'ENSDART00000109600' => array(
'start' => '34269261',
'end' => '34408468',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mvb12bb-201'
),
'ENSDART00000138921' => array(
'start' => '34268719',
'end' => '34417006',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'mvb12bb-001'
),
'ENSDART00000124675' => array(
'start' => '34631480',
'end' => '34631596',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.1798-201'
),
'ENSDART00000134904' => array(
'start' => '34505133',
'end' => '34524831',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-244l7.1-001'
),
'ENSDART00000156506' => array(
'start' => '34470446',
'end' => '34524834',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-244l7.1-002'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LN_0001' => array(
'genes_in_region' => array(
'ENSG00000119487' => array(
[maximum depth reached]
),
'ENSG00000167081' => array(
[maximum depth reached]
),
'ENSG00000196814' => array(
[maximum depth reached]
),
'ENSG00000214761' => array(
[maximum depth reached]
),
'ENSG00000227068' => array(
[maximum depth reached]
),
'ENSG00000228392' => array(
[maximum depth reached]
),
'ENSG00000229582' => array(
[maximum depth reached]
),
'ENSG00000243845' => array(
[maximum depth reached]
),
'ENSG00000253079' => array(
[maximum depth reached]
),
'ENSG00000274510' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Brain',
(int) 3 => 'Breast',
(int) 4 => 'Colon',
(int) 5 => 'Heart',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Muscle',
(int) 9 => 'Placenta',
(int) 10 => 'Testis',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Bladder',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Kidney',
(int) 18 => 'Liver',
(int) 19 => 'Lung',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 22 => 'Testis',
(int) 23 => 'Adipose',
(int) 24 => 'Adrenal',
(int) 25 => 'Brain',
(int) 26 => 'Breast',
(int) 27 => 'Colon',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Ovary',
(int) 31 => 'Placenta',
(int) 32 => 'Bladder',
(int) 33 => 'Brain',
(int) 34 => 'Breast',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Ovary',
(int) 38 => 'Placenta',
(int) 39 => 'Testis',
(int) 40 => 'Adrenal',
(int) 41 => 'Kidney',
(int) 42 => 'Ovary',
(int) 43 => 'Testis',
(int) 44 => 'Adipose',
(int) 45 => 'Brain',
(int) 46 => 'Breast',
(int) 47 => 'Colon',
(int) 48 => 'Heart',
(int) 49 => 'Liver',
(int) 50 => 'Lung',
(int) 51 => 'Muscle',
(int) 52 => 'Testis',
(int) 53 => 'Colon',
(int) 54 => 'Muscle',
(int) 55 => 'Breast',
(int) 56 => 'Muscle',
(int) 57 => 'Bladder',
(int) 58 => 'Muscle',
(int) 59 => 'Ovary',
(int) 60 => 'Placenta',
(int) 61 => 'Testis',
(int) 62 => 'Liver',
(int) 63 => 'Adipose',
(int) 64 => 'Adrenal',
(int) 65 => 'Bladder',
(int) 66 => 'Breast',
(int) 67 => 'Colon',
(int) 68 => 'Heart',
(int) 69 => 'Kidney',
(int) 70 => 'Liver',
(int) 71 => 'Lung',
(int) 72 => 'Muscle',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis',
(int) 76 => 'Breast',
(int) 77 => 'Liver',
(int) 78 => 'Liver',
(int) 79 => 'Adipose',
(int) 80 => 'Adrenal',
(int) 81 => 'Brain',
(int) 82 => 'Colon',
(int) 83 => 'Heart',
(int) 84 => 'Liver',
(int) 85 => 'Lung',
(int) 86 => 'Muscle',
(int) 87 => 'Ovary',
(int) 88 => 'Placenta',
(int) 89 => 'Testis',
(int) 90 => 'Lung',
(int) 91 => 'Muscle',
(int) 92 => 'Brain',
(int) 93 => 'Breast',
(int) 94 => 'Liver',
(int) 95 => 'Lung',
(int) 96 => 'Brain',
(int) 97 => 'Liver',
(int) 98 => 'Lung',
(int) 99 => 'Liver',
(int) 100 => 'Adipose',
(int) 101 => 'Adrenal',
(int) 102 => 'Bladder',
(int) 103 => 'Brain',
(int) 104 => 'Breast',
(int) 105 => 'Colon',
(int) 106 => 'Heart',
(int) 107 => 'Kidney',
(int) 108 => 'Liver',
(int) 109 => 'Lung',
(int) 110 => 'Muscle',
(int) 111 => 'Ovary',
(int) 112 => 'Placenta',
(int) 113 => 'Testis',
(int) 114 => 'Ovary',
(int) 115 => 'Adipose',
(int) 116 => 'Heart',
(int) 117 => 'Kidney',
(int) 118 => 'Adipose',
(int) 119 => 'Adrenal',
(int) 120 => 'Bladder',
(int) 121 => 'Brain',
(int) 122 => 'Breast',
(int) 123 => 'Colon',
(int) 124 => 'Heart',
(int) 125 => 'Kidney',
(int) 126 => 'Liver',
(int) 127 => 'Lung',
(int) 128 => 'Muscle',
(int) 129 => 'Ovary',
(int) 130 => 'Placenta',
(int) 131 => 'Testis',
(int) 132 => 'Ovary',
(int) 133 => 'Testis',
(int) 134 => 'Breast',
(int) 135 => 'Lung',
(int) 136 => 'Ovary',
(int) 137 => 'Breast',
(int) 138 => 'Colon',
(int) 139 => 'Kidney',
(int) 140 => 'Liver',
(int) 141 => 'Adipose',
(int) 142 => 'Adrenal',
(int) 143 => 'Breast',
(int) 144 => 'Colon',
(int) 145 => 'Heart',
(int) 146 => 'Kidney',
(int) 147 => 'Liver',
(int) 148 => 'Lung',
(int) 149 => 'Ovary',
(int) 150 => 'Placenta',
(int) 151 => 'Testis',
(int) 152 => 'Adipose',
(int) 153 => 'Adrenal',
(int) 154 => 'Bladder',
(int) 155 => 'Brain',
(int) 156 => 'Breast',
(int) 157 => 'Colon',
(int) 158 => 'Kidney',
(int) 159 => 'Liver',
(int) 160 => 'Lung',
(int) 161 => 'Ovary',
(int) 162 => 'Placenta',
(int) 163 => 'Testis',
(int) 164 => 'Adrenal',
(int) 165 => 'Brain',
(int) 166 => 'Breast',
(int) 167 => 'Lung',
(int) 168 => 'Testis',
(int) 169 => 'Placenta',
(int) 170 => 'Testis',
(int) 171 => 'Colon',
(int) 172 => 'Liver',
(int) 173 => 'Ovary',
(int) 174 => 'Testis',
(int) 175 => 'Adipose',
(int) 176 => 'Adrenal',
(int) 177 => 'Brain',
(int) 178 => 'Breast',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Muscle',
(int) 184 => 'Ovary',
(int) 185 => 'Placenta',
(int) 186 => 'Testis',
(int) 187 => 'Kidney',
(int) 188 => 'Ovary',
(int) 189 => 'Adipose',
(int) 190 => 'Adrenal',
(int) 191 => 'Brain',
(int) 192 => 'Breast',
(int) 193 => 'Colon',
(int) 194 => 'Heart',
(int) 195 => 'Kidney',
(int) 196 => 'Liver',
(int) 197 => 'Lung',
(int) 198 => 'Ovary',
(int) 199 => 'Testis'
)
),
'CIL_0007LN_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000038696' => array(
[maximum depth reached]
),
'ENSMUSG00000038718' => array(
[maximum depth reached]
),
'ENSMUSG00000038740' => array(
[maximum depth reached]
),
'ENSMUSG00000081992' => array(
[maximum depth reached]
),
'ENSMUSG00000083233' => array(
[maximum depth reached]
),
'ENSMUSG00000083503' => array(
[maximum depth reached]
),
'ENSMUSG00000084908' => array(
[maximum depth reached]
),
'ENSMUSG00000085987' => array(
[maximum depth reached]
),
'ENSMUSG00000086484' => array(
[maximum depth reached]
),
'ENSMUSG00000086904' => array(
[maximum depth reached]
),
'ENSMUSG00000087461' => array(
[maximum depth reached]
),
'ENSMUSG00000089596' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Heart',
(int) 16 => 'Kidney',
(int) 17 => 'Muscle',
(int) 18 => 'Breast',
(int) 19 => 'Lung',
(int) 20 => 'Adipose',
(int) 21 => 'Adrenal',
(int) 22 => 'Bladder',
(int) 23 => 'Brain',
(int) 24 => 'Breast',
(int) 25 => 'Colon',
(int) 26 => 'Heart',
(int) 27 => 'Kidney',
(int) 28 => 'Liver',
(int) 29 => 'Lung',
(int) 30 => 'Muscle',
(int) 31 => 'Ovary',
(int) 32 => 'Placenta',
(int) 33 => 'Testis',
(int) 34 => 'Adipose',
(int) 35 => 'Adrenal',
(int) 36 => 'Breast',
(int) 37 => 'Colon',
(int) 38 => 'Kidney',
(int) 39 => 'Liver',
(int) 40 => 'Lung',
(int) 41 => 'Muscle',
(int) 42 => 'Ovary',
(int) 43 => 'Placenta',
(int) 44 => 'Testis',
(int) 45 => 'Brain',
(int) 46 => 'Muscle',
(int) 47 => 'Ovary',
(int) 48 => 'Placenta',
(int) 49 => 'Testis',
(int) 50 => 'Bladder',
(int) 51 => 'Brain',
(int) 52 => 'Liver',
(int) 53 => 'Muscle',
(int) 54 => 'Ovary',
(int) 55 => 'Placenta',
(int) 56 => 'Brain',
(int) 57 => 'Ovary',
(int) 58 => 'Placenta',
(int) 59 => 'Testis',
(int) 60 => 'Adipose',
(int) 61 => 'Adrenal',
(int) 62 => 'Bladder',
(int) 63 => 'Brain',
(int) 64 => 'Breast',
(int) 65 => 'Colon',
(int) 66 => 'Heart',
(int) 67 => 'Kidney',
(int) 68 => 'Liver',
(int) 69 => 'Lung',
(int) 70 => 'Muscle',
(int) 71 => 'Ovary',
(int) 72 => 'Placenta',
(int) 73 => 'Testis',
(int) 74 => 'Adipose',
(int) 75 => 'Adrenal',
(int) 76 => 'Bladder',
(int) 77 => 'Brain',
(int) 78 => 'Breast',
(int) 79 => 'Colon',
(int) 80 => 'Heart',
(int) 81 => 'Kidney',
(int) 82 => 'Liver',
(int) 83 => 'Lung',
(int) 84 => 'Muscle',
(int) 85 => 'Ovary',
(int) 86 => 'Placenta',
(int) 87 => 'Testis',
(int) 88 => 'Breast',
(int) 89 => 'Liver',
(int) 90 => 'Testis',
(int) 91 => 'Liver',
(int) 92 => 'Brain',
(int) 93 => 'Ovary',
(int) 94 => 'Testis',
(int) 95 => 'Adrenal',
(int) 96 => 'Bladder',
(int) 97 => 'Brain',
(int) 98 => 'Breast',
(int) 99 => 'Heart',
(int) 100 => 'Kidney',
(int) 101 => 'Liver',
(int) 102 => 'Muscle',
(int) 103 => 'Ovary',
(int) 104 => 'Placenta',
(int) 105 => 'Testis',
(int) 106 => 'Adrenal',
(int) 107 => 'Breast',
(int) 108 => 'Liver',
(int) 109 => 'Testis',
(int) 110 => 'Adipose',
(int) 111 => 'Bladder',
(int) 112 => 'Brain',
(int) 113 => 'Breast',
(int) 114 => 'Colon',
(int) 115 => 'Heart',
(int) 116 => 'Liver',
(int) 117 => 'Lung',
(int) 118 => 'Muscle',
(int) 119 => 'Ovary',
(int) 120 => 'Placenta',
(int) 121 => 'Testis',
(int) 122 => 'Brain',
(int) 123 => 'Placenta',
(int) 124 => 'Adipose',
(int) 125 => 'Bladder',
(int) 126 => 'Brain',
(int) 127 => 'Breast',
(int) 128 => 'Colon',
(int) 129 => 'Heart',
(int) 130 => 'Kidney',
(int) 131 => 'Liver',
(int) 132 => 'Lung',
(int) 133 => 'Muscle',
(int) 134 => 'Ovary',
(int) 135 => 'Placenta',
(int) 136 => 'Testis',
(int) 137 => 'Adipose',
(int) 138 => 'Adrenal',
(int) 139 => 'Bladder',
(int) 140 => 'Colon',
(int) 141 => 'Kidney',
(int) 142 => 'Liver',
(int) 143 => 'Lung',
(int) 144 => 'Ovary',
(int) 145 => 'Placenta',
(int) 146 => 'Testis',
(int) 147 => 'Brain',
(int) 148 => 'Breast',
(int) 149 => 'Colon',
(int) 150 => 'Heart',
(int) 151 => 'Liver',
(int) 152 => 'Lung',
(int) 153 => 'Muscle',
(int) 154 => 'Adrenal',
(int) 155 => 'Breast',
(int) 156 => 'Ovary',
(int) 157 => 'Adipose',
(int) 158 => 'Brain',
(int) 159 => 'Breast',
(int) 160 => 'Heart',
(int) 161 => 'Kidney',
(int) 162 => 'Lung',
(int) 163 => 'Muscle',
(int) 164 => 'Ovary',
(int) 165 => 'Adrenal',
(int) 166 => 'Brain',
(int) 167 => 'Breast',
(int) 168 => 'Colon',
(int) 169 => 'Heart',
(int) 170 => 'Liver',
(int) 171 => 'Lung',
(int) 172 => 'Ovary',
(int) 173 => 'Placenta',
(int) 174 => 'Testis',
(int) 175 => 'Adipose',
(int) 176 => 'Adrenal',
(int) 177 => 'Brain',
(int) 178 => 'Colon',
(int) 179 => 'Heart',
(int) 180 => 'Kidney',
(int) 181 => 'Liver',
(int) 182 => 'Lung',
(int) 183 => 'Ovary',
(int) 184 => 'Testis',
(int) 185 => 'Adipose',
(int) 186 => 'Bladder',
(int) 187 => 'Brain',
(int) 188 => 'Breast',
(int) 189 => 'Colon',
(int) 190 => 'Kidney',
(int) 191 => 'Liver',
(int) 192 => 'Lung',
(int) 193 => 'Ovary',
(int) 194 => 'Testis',
(int) 195 => 'Adipose',
(int) 196 => 'Adrenal',
(int) 197 => 'Bladder',
(int) 198 => 'Brain',
(int) 199 => 'Breast',
(int) 200 => 'Heart',
(int) 201 => 'Kidney',
(int) 202 => 'Liver',
(int) 203 => 'Lung',
(int) 204 => 'Muscle',
(int) 205 => 'Ovary',
(int) 206 => 'Placenta',
(int) 207 => 'Testis',
(int) 208 => 'Adipose',
(int) 209 => 'Bladder',
(int) 210 => 'Brain',
(int) 211 => 'Breast',
(int) 212 => 'Colon',
(int) 213 => 'Heart',
(int) 214 => 'Kidney',
(int) 215 => 'Liver',
(int) 216 => 'Lung',
(int) 217 => 'Ovary',
(int) 218 => 'Placenta',
(int) 219 => 'Testis',
(int) 220 => 'Liver',
(int) 221 => 'Liver',
(int) 222 => 'Ovary',
(int) 223 => 'Liver',
(int) 224 => 'Ovary'
)
),
'CIL_0007LN_0006' => array(
'genes_in_region' => array(
'ENSDARG00000013615' => array(
[maximum depth reached]
),
'ENSDARG00000079478' => array(
[maximum depth reached]
),
'ENSDARG00000094865' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Heart',
(int) 1 => 'Kidney',
(int) 2 => 'Brain',
(int) 3 => 'Kidney',
(int) 4 => 'Muscle',
(int) 5 => 'Brain',
(int) 6 => 'Kidney',
(int) 7 => 'Liver',
(int) 8 => 'Brain',
(int) 9 => 'Heart',
(int) 10 => 'Kidney',
(int) 11 => 'Liver',
(int) 12 => 'Brain',
(int) 13 => 'Heart',
(int) 14 => 'Kidney',
(int) 15 => 'Liver',
(int) 16 => 'Muscle',
(int) 17 => 'Brain',
(int) 18 => 'Kidney',
(int) 19 => 'Kidney'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LN_0003',
'tax_id' => '7955',
'chromosome' => '3',
'seq_start' => '12880404',
'seq_end' => '12884283',
'region_length' => '3879',
'region_type' => 'UCNEbase',
'el_id' => 'PBX3'
)
)
$gene_el = array(
'ENSMUST00000158971' => array(
'Liver' => array(
'average_FPKM' => '0.063',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.123',
'stddev_FPKM' => '0.00'
)
)
)
$gene_key = 'ENSMUSG00000089596'
$is_first = false
$tran_el = array(
'Liver' => array(
'average_FPKM' => '0.063',
'stddev_FPKM' => '0.00'
),
'Ovary' => array(
'average_FPKM' => '0.123',
'stddev_FPKM' => '0.00'
)
)
$tran_key = 'ENSMUST00000158971'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(MAPKAP1)