C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pre-B-cell leukemia homeobox 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000342287 PBX3-001 ENSG00000167081 9606 + 9:125747345-125967377 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000342287
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000342287 0.821±0.00 0.746±0.00 0.920±0.00 1.904±0.16 5.286±0.00 3.593±2.94 1.296±0.93 1.499±0.00 1.233±0.00 0.598±0.00 5.311±6.13 1.585±0.74 1.588±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080V CIL_00080V_0001 VISTA 9:125333480-125934659
CIL_0008LX CIL_0008LX_0001 VISTA 9:125343868-125945374
CIL_0007LN CIL_0007LN_0001 UCNEbase 9:125397521-126491100
CIL_0008Q0 CIL_0008Q0_0001 VISTA 9:125454655-126056093
CIL_0008GT CIL_0008GT_0001 VISTA 9:125458713-126060374
CIL_000961 CIL_000961_0001 VISTA 9:125460596-126063163
CIL_0008R5 CIL_0008R5_0001 VISTA 9:125463069-126064935
CIL_000848 CIL_000848_0001 VISTA 9:125521677-126122201
CIL_0008I6 CIL_0008I6_0001 VISTA 9:125544240-126146071
CIL_00086D CIL_00086D_0001 VISTA 9:125577886-126179048
CIL_0007YW CIL_0007YW_0001 VISTA 9:125583183-126184818
CIL_0007QH CIL_0007QH_0001 VISTA 9:125604132-126205273
CIL_000849 CIL_000849_0001 VISTA 9:125609586-126210723
CIL_000960 CIL_000960_0001 VISTA 9:125672879-126273895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007387 TAS anterior compartment pattern formation
GO:0007388 TAS posterior compartment specification

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113132 Pbx3-002 protein_coding Mus_musculus 0 3358
ENSMUST00000040638 Pbx3-001 protein_coding Mus_musculus 0 1777
ENSMUST00000176213 Pbx3-010 processed_transcript Mus_musculus 0 1465
ENSMUST00000143776 Pbx3-004 nonsense_mediated_decay Mus_musculus 0 1031
ENSMUST00000153278 Pbx3-003 nonsense_mediated_decay Mus_musculus 0 741
ENSMUST00000175855 Pbx3-006 nonsense_mediated_decay Mus_musculus 0 736
ENSMUST00000138021 Pbx3-007 protein_coding Mus_musculus 0 625
ENSMUST00000141653 Pbx3-009 protein_coding Mus_musculus 0 555
ENSMUST00000127353 Pbx3-008 protein_coding Mus_musculus 0 318
ENSMUST00000155423 Pbx3-005 retained_intron Mus_musculus 0 257

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