C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET domain containing 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000168137 SETD5 9606 + 3:9397615-9479240 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000302463 SETD5-003 9429950-9476478 protein_coding
  ENST00000399686 SETD5-015 9442167-9479240 protein_coding
  ENST00000402198 SETD5-201 9397719-9478154 protein_coding
  ENST00000406341 SETD5-001 9397904-9478154 protein_coding
  ENST00000407969 SETD5-004 9428925-9478154 protein_coding
  ENST00000413704 SETD5-016 9442170-9476154 nonsense_mediated_decay
  ENST00000415650 SETD5-021 9397873-9433878 nonsense_mediated_decay
  ENST00000421188 SETD5-013 9447970-9473372 protein_coding
  ENST00000431285 SETD5-007 9397615-9440698 nonsense_mediated_decay
  ENST00000442373 SETD5-023 9429925-9441626 protein_coding
  ENST00000443339 SETD5-002 9397900-9464753 nonsense_mediated_decay
  ENST00000450326 SETD5-020 9397719-9435825 protein_coding
  ENST00000459941 SETD5-014 9473395-9475705 retained_intron
  ENST00000463180 SETD5-019 9397856-9429325 retained_intron
  ENST00000464410 SETD5-025 9445439-9447718 retained_intron
  ENST00000466172 SETD5-009 9429973-9431876 processed_transcript
  ENST00000466242 SETD5-006 9442890-9476459 retained_intron
  ENST00000466826 SETD5-029 9475050-9475659 retained_intron
  ENST00000468208 SETD5-022 9423211-9429008 processed_transcript
  ENST00000476740 SETD5-030 9448559-9464693 processed_transcript
  ENST00000478475 SETD5-010 9397863-9433397 processed_transcript
  ENST00000478961 SETD5-012 9448475-9464810 processed_transcript
  ENST00000479538 SETD5-028 9473423-9474971 processed_transcript
  ENST00000486465 SETD5-026 9470667-9474769 retained_intron
  ENST00000488236 SETD5-011 9447687-9464954 processed_transcript
  ENST00000490791 SETD5-008 9433485-9440507 processed_transcript
  ENST00000492939 SETD5-027 9473236-9475265 retained_intron
  ENST00000493918 SETD5-005 9433993-9476459 retained_intron
  ENST00000497213 SETD5-024 9442170-9445732 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000302463ENST00000402198ENST00000406341ENST00000407969ENST00000442373ENST00000466242ENST00000479538ENST00000492939ENST00000493918
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000302463 N/A N/A N/A 0.800±0.00 3.676±0.00 N/A N/A N/A N/A N/A N/A N/A 1.416±0.00 N/A
ENST00000402198 N/A N/A N/A 2.412±0.00 1.476±0.00 N/A N/A N/A N/A N/A 1.313±0.00 10.818±0.00 6.226±7.49 N/A
ENST00000406341 3.135±0.00 N/A N/A 1.908±0.45 2.105±0.00 2.087±0.00 2.181±0.00 N/A 0.686±0.00 3.184±0.00 1.395±0.00 2.381±0.19 N/A 4.182±0.00
ENST00000407969 5.135±0.00 4.519±0.00 2.283±0.00 1.542±0.00 3.887±0.61 5.012±0.00 N/A 8.484±0.00 2.800±1.27 6.928±1.30 2.131±0.92 5.012±4.13 2.220±0.73 5.611±0.00
ENST00000442373 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.012±0.00 N/A N/A
ENST00000466242 N/A N/A N/A N/A N/A N/A 0.931±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000479538 N/A N/A 48.554±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492939 N/A N/A 26.838±0.00 12.175±0.00 N/A 43.755±0.00 N/A N/A N/A N/A 28.940±0.00 N/A N/A N/A
ENST00000493918 N/A N/A N/A N/A N/A N/A 0.703±0.00 N/A 2.792±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QC CIL_0004QC_0001 CGP 3:9362842-9479240
CIL_0002W7 CIL_0002W7_0001 CGP 3:9397615-9553802

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000078576 setd5 SET domain containing 5 protein_coding Danio_rerio
ENSMUSG00000034269 Setd5 SET domain containing 5 protein_coding Mus_musculus

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