C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000402198 SETD5-201 ENSG00000168137 9606 + 3:9397719-9478154 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastMuscleOvaryPlacentaENST00000402198
Transcript ID Brain Breast Muscle Ovary Placenta
ENST00000402198 2.412±0.00 1.476±0.00 1.313±0.00 10.818±0.00 6.226±7.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004QC CIL_0004QC_0001 CGP 3:9362842-9479240
CIL_0002W7 CIL_0002W7_0001 CGP 3:9397615-9553802

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042889 Setd5-001 protein_coding Mus_musculus 0 6913
ENSMUST00000113157 Setd5-201 protein_coding Mus_musculus 0 6433
ENSMUST00000113155 Setd5-002 protein_coding Mus_musculus 0 6433
ENSMUST00000149584 Setd5-008 retained_intron Mus_musculus 0 6324
ENSMUST00000142215 Setd5-006 processed_transcript Mus_musculus 0 5637
ENSMUST00000153513 Setd5-011 processed_transcript Mus_musculus 0 3602
ENSMUST00000150107 Setd5-010 retained_intron Mus_musculus 0 3264
ENSMUST00000141072 Setd5-005 retained_intron Mus_musculus 0 2372
ENSMUST00000138327 Setd5-009 retained_intron Mus_musculus 0 1646
ENSMUST00000124467 Setd5-007 retained_intron Mus_musculus 0 1589
ENSMUST00000143998 Setd5-003 retained_intron Mus_musculus 0 394
ENSMUST00000156048 Setd5-013 processed_transcript Mus_musculus 0 363
ENSMUST00000125003 Setd5-012 processed_transcript Mus_musculus 0 309
ENSMUST00000136128 Setd5-004 processed_transcript Mus_musculus 0 287

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