C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alveolar soft part sarcoma chromosome region, candidate 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306739 ASPSCR1-001 ENSG00000169696 9606 + 17:81977550-82017406 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000306739
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000306739 4.116±0.00 8.491±0.00 0.499±0.00 3.199±1.73 4.195±0.00 1.371±0.09 3.366±0.00 5.561±2.92 10.696±0.00 5.128±0.00 14.052±0.00 7.942±3.48 22.380±11.98 10.522±6.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VL CIL_0004VL_0001 CGP 17:81952507-82017406
CIL_0004VS CIL_0004VS_0001 CGP 17:81976807-82024107

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005515 IPI:IEA protein binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0061024 TAS membrane organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106159 Aspscr1-202 protein_coding Mus_musculus 0 780
ENSMUST00000103016 Aspscr1-002 protein_coding Mus_musculus 0 780
ENSMUST00000026135 Aspscr1-001 protein_coding Mus_musculus 0 780
ENSMUST00000106158 Aspscr1-201 protein_coding Mus_musculus 0 612
ENSMUST00000168714 Aspscr1-018 protein_coding Mus_musculus 0 507
ENSMUST00000168097 Aspscr1-022 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000143844 Aspscr1-017 nonsense_mediated_decay Mus_musculus 0 459
ENSMUST00000149389 Aspscr1-003 protein_coding Mus_musculus 0 435
ENSMUST00000131727 Aspscr1-007 protein_coding Mus_musculus 0 435
ENSMUST00000135346 Aspscr1-004 protein_coding Mus_musculus 0 433
ENSMUST00000151160 Aspscr1-011 protein_coding Mus_musculus 0 374
ENSMUST00000106160 Aspscr1-009 protein_coding Mus_musculus 0 374
ENSMUST00000153346 Aspscr1-006 protein_coding Mus_musculus 0 366
ENSMUST00000167678 Aspscr1-019 protein_coding Mus_musculus 0 342
ENSMUST00000166838 Aspscr1-008 nonsense_mediated_decay Mus_musculus 0 342
ENSMUST00000169964 Aspscr1-014 retained_intron Mus_musculus 0 320
ENSMUST00000127269 Aspscr1-005 protein_coding Mus_musculus 0 248
ENSMUST00000129644 Aspscr1-010 protein_coding Mus_musculus 4.06377e-44 183

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