C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alveolar soft part sarcoma chromosome region, candidate 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000577733 ASPSCR1-005 ENSG00000169696 9606 + 17:82004345-82017404 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000577733
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000577733 0.344±0.00 0.422±0.21 0.593±0.32 0.309±0.13 0.310±0.11 0.564±0.34 0.079±0.00 0.223±0.00 1.247±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004VL CIL_0004VL_0001 CGP 17:81952507-82017406
CIL_0004VS CIL_0004VS_0001 CGP 17:81976807-82024107

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106159 Aspscr1-202 protein_coding Mus_musculus 0 780
ENSMUST00000103016 Aspscr1-002 protein_coding Mus_musculus 0 780
ENSMUST00000026135 Aspscr1-001 protein_coding Mus_musculus 0 780
ENSMUST00000106158 Aspscr1-201 protein_coding Mus_musculus 0 344
ENSMUST00000106160 Aspscr1-009 protein_coding Mus_musculus 0 344
ENSMUST00000167678 Aspscr1-019 protein_coding Mus_musculus 0 342
ENSMUST00000166838 Aspscr1-008 nonsense_mediated_decay Mus_musculus 0 342
ENSMUST00000168097 Aspscr1-022 nonsense_mediated_decay Mus_musculus 0 257

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