C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin-conjugating enzyme E2E 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000410062 UBE2E3-001 ENSG00000170035 9606 + 2:180980606-181063441 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000410062
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000410062 13.831±0.00 5.926±0.00 12.933±3.32 9.466±8.01 7.352±4.52 7.078±5.68 7.493±4.85 6.183±3.20 13.853±0.00 15.126±2.12 8.563±3.29 6.824±0.75 19.041±1.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004C2 CIL_0004C2_0002 CGP 2:179944876-181076585
CIL_0004BZ CIL_0004BZ_0002 CGP 2:180967248-181536187

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005524 IEA ATP binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0008152 IEA metabolic process
GO:0016881 IEA acid-amino acid ligase activity
GO:0040008 IEA regulation of growth
GO:0070534 IDA protein K63-linked ubiquitination
GO:0070936 IDA protein K48-linked ubiquitination
GO:0070979 IDA protein K11-linked ubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000028398 Ube2e3-001 protein_coding Mus_musculus 0 2146
ENSMUST00000121433 Ube2e3-007 protein_coding Mus_musculus 0 1410
ENSMUST00000153614 Ube2e3-002 retained_intron Mus_musculus 0 798
ENSMUST00000117523 Gm14865-001 processed_pseudogene Mus_musculus 0 560
ENSMUST00000130914 Ube2e3-004 protein_coding Mus_musculus 0 525
ENSDART00000020550 ube2e3-001 protein_coding Danio_rerio 0 492
ENSMUST00000138864 Ube2e3-003 retained_intron Mus_musculus 0 484
ENSMUST00000153266 Ube2e3-005 retained_intron Mus_musculus 0 398
ENSDART00000138549 ube2e3-003 retained_intron Danio_rerio 0 387

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