C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171345 KRT19 9606 - 17:41523617-41528308 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000361566 KRT19-001 41523617-41528308 protein_coding
  ENST00000455635 KRT19-002 41524519-41528299 protein_coding
  ENST00000462611 KRT19-003 41524978-41525672 retained_intron
  ENST00000468880 KRT19-005 41523714-41524993 retained_intron
  ENST00000471565 KRT19-006 41523988-41524751 retained_intron
  ENST00000479031 KRT19-004 41524493-41525221 retained_intron
  ENST00000593096 KRT19-007 41523875-41525445 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361566ENST00000455635ENST00000468880ENST00000593096
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361566 2.806±0.00 0.238±0.00 6.058±0.00 0.349±0.00 67.816±32.58 106.195±78.09 1.050±0.52 60.222±59.96 19.763±18.25 77.539±51.64 3.245±0.00 336.895±268.11 672.871±300.84 12.376±10.89
ENST00000455635 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1402.890±0.00 536.043±0.00 3.224±0.00
ENST00000468880 N/A 0.077±0.00 N/A N/A N/A N/A 0.154±0.00 N/A N/A N/A 0.196±0.00 N/A N/A N/A
ENST00000593096 N/A 0.139±0.00 N/A 0.232±0.00 10.901±0.00 7.732±0.00 2.029±0.00 41.565±0.00 12.306±0.00 24.094±16.67 2.536±0.00 147.299±154.48 171.564±0.00 6.056±4.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000G CGP 17:41513743-41528308
CIL_0000TN CIL_0000TN_0004 CGP 17:41523617-41572058

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005882 IEA intermediate filament
GO:0008307 IDA structural constituent of muscle
GO:0016010 IEA dystrophin-associated glycoprotein complex
GO:0016032 IEA viral process
GO:0030018 IEA Z disc
GO:0032403 IEA protein complex binding
GO:0042383 IEA sarcolemma
GO:0043034 IDA costamere
GO:0043627 IEP response to estrogen
GO:0045214 IDA sarcomere organization
GO:0060706 IEA cell differentiation involved in embryonic placenta development
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 IDA cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000212 zgc:92061 zgc:92061 protein_coding Danio_rerio
ENSDARG00000014356 zgc:92035 zgc:92035 protein_coding Danio_rerio
ENSDARG00000022334 BX469912.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000023082 krt1-19d keratin, type 1, gene 19d protein_coding Danio_rerio
ENSDARG00000036832 cyt1l type I cytokeratin, enveloping layer, like protein_coding Danio_rerio
ENSDARG00000036834 zgc:109868 zgc:109868 protein_coding Danio_rerio
ENSDARG00000036840 krt15 keratin 15 protein_coding Danio_rerio
ENSDARG00000044975 zgc:153629 zgc:153629 protein_coding Danio_rerio
ENSDARG00000044976 zgc:136902 zgc:136902 protein_coding Danio_rerio
ENSDARG00000090268 si:dkeyp-113d7.4 si:dkeyp-113d7.4 protein_coding Danio_rerio
ENSDARG00000092947 cyt1 type I cytokeratin, enveloping layer protein_coding Danio_rerio
ENSDARG00000094041 krt17 keratin 17 protein_coding Danio_rerio
ENSDARG00000095147 wu:fb17f05 wu:fb17f05 protein_coding Danio_rerio
ENSMUSG00000020911 Krt19 keratin 19 protein_coding Mus_musculus

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