C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: keratin 19
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000020911 Krt19 10090 - 11:100140810-100148665 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007317 Krt19-001 100140810-100146120 protein_coding
  ENSMUST00000125888 Krt19-003 100142120-100148665 processed_transcript
  ENSMUST00000126460 Krt19-002 100140907-100143699 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007317ENSMUST00000125888ENSMUST00000126460
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007317 59.220±52.86 1.917±0.62 290.828±73.54 1.101±0.80 265.645±122.19 2094.027±417.78 6.997±4.78 6.954±2.28 1.599±1.17 126.852±25.36 0.205±0.09 155.023±59.72 404.386±194.48 2.229±2.38
ENSMUST00000125888 N/A N/A N/A 0.249±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126460 N/A N/A 131.017±35.42 0.543±0.07 71.303±23.06 1010.140±60.45 1.117±0.00 1.811±0.40 1.290±0.93 25.407±0.00 0.501±0.00 46.452±23.71 315.363±264.90 1.295±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_0017 CGP 11:100131758-100148665
CIL_0000TN CIL_0000TN_0006 CGP 11:100140810-100193246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005882 IEA intermediate filament
GO:0008307 IEA structural constituent of muscle
GO:0016010 IEA dystrophin-associated glycoprotein complex
GO:0030018 IDA Z disc
GO:0032403 IEA protein complex binding
GO:0042383 IDA sarcolemma
GO:0043034 IEA costamere
GO:0043627 IEA response to estrogen
GO:0045214 IEA sarcomere organization
GO:0060706 IGI cell differentiation involved in embryonic placenta development
GO:0070062 IEA extracellular vesicular exosome
GO:0071944 ISO cell periphery

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000000212 zgc:92061 zgc:92061 protein_coding Danio_rerio
ENSDARG00000014356 zgc:92035 zgc:92035 protein_coding Danio_rerio
ENSDARG00000022334 BX469912.1 Uncharacterized protein protein_coding Danio_rerio
ENSDARG00000023082 krt1-19d keratin, type 1, gene 19d protein_coding Danio_rerio
ENSDARG00000036832 cyt1l type I cytokeratin, enveloping layer, like protein_coding Danio_rerio
ENSDARG00000036834 zgc:109868 zgc:109868 protein_coding Danio_rerio
ENSDARG00000036840 krt15 keratin 15 protein_coding Danio_rerio
ENSDARG00000044975 zgc:153629 zgc:153629 protein_coding Danio_rerio
ENSDARG00000044976 zgc:136902 zgc:136902 protein_coding Danio_rerio
ENSDARG00000090268 si:dkeyp-113d7.4 si:dkeyp-113d7.4 protein_coding Danio_rerio
ENSDARG00000092947 cyt1 type I cytokeratin, enveloping layer protein_coding Danio_rerio
ENSDARG00000094041 krt17 keratin 17 protein_coding Danio_rerio
ENSDARG00000095147 wu:fb17f05 wu:fb17f05 protein_coding Danio_rerio
ENSG00000171345 KRT19 keratin 19 protein_coding Homo_sapiens

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