C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: keratin 19
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000361566 KRT19-001 ENSG00000171345 9606 - 17:41523617-41528308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000361566
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000361566 2.806±0.00 0.238±0.00 6.058±0.00 0.349±0.00 67.816±32.58 106.195±78.09 1.050±0.52 60.222±59.96 19.763±18.25 77.539±51.64 3.245±0.00 336.895±268.11 672.871±300.84 12.376±10.89

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056U CIL_00056U_000G CGP 17:41513743-41528308
CIL_0000TN CIL_0000TN_0004 CGP 17:41523617-41572058

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005200 TAS structural constituent of cytoskeleton
GO:0005515 IPI protein binding
GO:0005882 IEA intermediate filament
GO:0008307 IDA structural constituent of muscle
GO:0016010 IEA dystrophin-associated glycoprotein complex
GO:0016032 IEA viral process
GO:0030018 IEA Z disc
GO:0032403 IEA protein complex binding
GO:0042383 IEA sarcolemma
GO:0043034 IDA costamere
GO:0043627 IEP response to estrogen
GO:0045214 IDA sarcomere organization
GO:0060706 IEA cell differentiation involved in embryonic placenta development
GO:0070062 IDA extracellular vesicular exosome
GO:0071944 IDA cell periphery

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000007317 Krt19-001 protein_coding Mus_musculus 0 1120
ENSMUST00000126460 Krt19-002 processed_transcript Mus_musculus 0 819
ENSMUST00000080893 Krt17-001 protein_coding Mus_musculus 0 566
ENSMUST00000017270 Krt42-001 protein_coding Mus_musculus 0 549
ENSMUST00000007272 Krt14-001 protein_coding Mus_musculus 0 536
ENSMUST00000107411 Krt15-001 protein_coding Mus_musculus 0 466
ENSMUST00000007275 Krt13-001 protein_coding Mus_musculus 0 449
ENSMUST00000137265 Krt14-002 processed_transcript Mus_musculus 0 401
ENSMUST00000125888 Krt19-003 processed_transcript Mus_musculus 0 381
ENSMUST00000148502 Krt15-002 retained_intron Mus_musculus 0 233
ENSMUST00000128934 Krt13-002 processed_transcript Mus_musculus 0 219
ENSMUST00000121423 Gm11597-001 unprocessed_pseudogene Mus_musculus 0 198

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