Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	jumonji domain containing 1C
ENST00000542921	JMJD1C-201	ENSG00000171988	9606	-	10:63167590-63269066	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Testis
ENST00000542921	2.665±0.00	1.355±0.00	1.243±0.00	2.482±1.30	2.204±0.00	1.264±0.05	0.855±0.00	2.011±0.00	4.561±0.00	0.642±0.00	1.893±0.68	2.517±0.00

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0007NX	CIL_0007NX_0001	UCNEbase	10:63000173-63167486
CIL_0000H2	CIL_0000H2_0002	CGP	10:63133247-63465881

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005515	IPI	protein binding
GO:0005622	NAS	intracellular
GO:0005654	TAS	nucleoplasm
GO:0006351	IEA	transcription, DNA-templated
GO:0006355	TAS	regulation of transcription, DNA-templated
GO:0007596	TAS	blood coagulation
GO:0016568	IEA	chromatin modification
GO:0046872	IEA	metal ion binding
GO:0046966	TAS	thyroid hormone receptor binding
GO:0051213	IEA	dioxygenase activity
GO:0055114	IEA	oxidation-reduction process

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000173689	Jmjd1c-001	protein_coding	Mus_musculus	0	8359
ENSMUST00000051446	Jmjd1c-201	protein_coding	Mus_musculus	0	7884
ENSMUST00000174408	Jmjd1c-009	protein_coding	Mus_musculus	0	7871
ENSMUST00000174317	Jmjd1c-008	protein_coding	Mus_musculus	0	2379
ENSMUST00000173762	Jmjd1c-003	protein_coding	Mus_musculus	0	1910
ENSMUST00000173236	Jmjd1c-004	retained_intron	Mus_musculus	0	931
ENSMUST00000173661	Jmjd1c-005	retained_intron	Mus_musculus	0	771
ENSMUST00000173949	Jmjd1c-006	retained_intron	Mus_musculus	0	634
ENSMUST00000173187	Jmjd1c-011	retained_intron	Mus_musculus	0	348

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