Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Accession	Transcript Name	Contained in Gene	Tax ID	Strand	Position	Biotype
Transcript Info
Description:	jumonji domain containing 1C
ENST00000399262	JMJD1C-001	ENSG00000171988	9606	-	10:63167221-63465881	protein_coding

Expression Patterns

Transcript ID	Adipose	Adrenal	Brain	Breast	Colon	Heart	Kidney	Liver	Lung	Muscle	Ovary	Placenta	Testis
ENST00000399262	1.871±0.00	1.467±0.00	1.011±0.00	1.622±0.49	1.878±0.86	0.854±0.00	1.701±0.00	0.716±0.00	2.139±0.70	1.195±0.22	3.814±2.24	0.973±0.37	4.225±0.86

Conserved Regions
Region ID	Sub-Region	Region Type	Position
CIL_0007NX	CIL_0007NX_0001	UCNEbase	10:63000173-63167486
CIL_0000H2	CIL_0000H2_0002	CGP	10:63133247-63465881

Gene Ontology
GO ID	Evidence Type	GO Description
GO:0005515	IPI	protein binding
GO:0005622	NAS	intracellular
GO:0005654	TAS	nucleoplasm
GO:0006351	IEA	transcription, DNA-templated
GO:0006355	TAS	regulation of transcription, DNA-templated
GO:0007596	TAS	blood coagulation
GO:0016568	IEA	chromatin modification
GO:0046872	IEA	metal ion binding
GO:0046966	TAS	thyroid hormone receptor binding
GO:0051213	IEA	dioxygenase activity
GO:0055114	IEA	oxidation-reduction process

Homologs
ENSEMBL Accession	Gene Name	Biotype	Species	E-Value	Bit Score
ENSMUST00000051446	Jmjd1c-201	protein_coding	Mus_musculus	0	8287
ENSMUST00000174408	Jmjd1c-009	protein_coding	Mus_musculus	0	8272
ENSMUST00000173689	Jmjd1c-001	protein_coding	Mus_musculus	0	7873
ENSMUST00000174317	Jmjd1c-008	protein_coding	Mus_musculus	0	2379
ENSMUST00000173762	Jmjd1c-003	protein_coding	Mus_musculus	0	1910
ENSMUST00000173236	Jmjd1c-004	retained_intron	Mus_musculus	0	931
ENSMUST00000174062	Jmjd1c-007	retained_intron	Mus_musculus	0	392
ENSMUST00000173187	Jmjd1c-011	retained_intron	Mus_musculus	0	348
ENSMUST00000173295	Jmjd1c-010	retained_intron	Mus_musculus	0	246

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