C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: ribosomal protein L15
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174748 RPL15 9606 + 3:23916545-23923692 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000307839 RPL15-001 23916545-23920977 protein_coding
  ENST00000354811 RPL15-007 23917705-23919551 protein_coding
  ENST00000412097 RPL15-011 23917147-23919411 protein_coding
  ENST00000413699 RPL15-002 23917131-23920820 protein_coding
  ENST00000415719 RPL15-013 23917148-23919547 protein_coding
  ENST00000422218 RPL15-009 23916591-23919286 protein_coding
  ENST00000434031 RPL15-014 23916979-23919409 protein_coding
  ENST00000435882 RPL15-005 23917148-23919791 protein_coding
  ENST00000436146 RPL15-008 23917847-23920847 nonsense_mediated_decay
  ENST00000456530 RPL15-201 23916804-23923692 protein_coding
  ENST00000465786 RPL15-006 23917148-23919552 retained_intron
  ENST00000490223 RPL15-004 23917148-23919551 retained_intron
  ENST00000611050 RPL15-202 23916804-23920856 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000307839ENST00000413699ENST00000415719ENST00000422218ENST00000434031ENST00000435882ENST00000436146
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000307839 N/A N/A 4.789±0.00 N/A 7.524±0.00 N/A N/A N/A 11.872±0.00 N/A N/A 42.548±0.00 N/A 30.726±0.00
ENST00000413699 186.567±0.00 213.783±0.00 11.019±0.00 133.988±78.22 96.321±70.46 137.481±107.10 36.662±26.30 78.639±50.36 47.029±9.16 137.875±97.84 61.695±53.30 127.884±100.50 110.934±20.33 110.427±50.63
ENST00000415719 N/A N/A N/A N/A N/A N/A 76.500±0.00 N/A 100.909±0.00 N/A 167.609±0.00 570.384±0.00 441.484±65.12 N/A
ENST00000422218 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 308.139±0.00 465.726±0.00 317.561±0.00
ENST00000434031 N/A N/A 19.245±0.00 N/A 71.337±0.00 47.472±0.00 N/A N/A N/A 55.055±0.00 42.885±0.00 61.487±0.00 N/A N/A
ENST00000435882 N/A N/A 14.208±0.00 N/A 25.412±0.00 32.494±0.00 19.888±0.00 51.482±0.00 57.929±0.00 N/A 36.591±0.00 45.196±0.00 116.687±0.00 N/A
ENST00000436146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 94.842±25.11 40.799±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EM CIL_0002EM_0002 CGP 3:23891660-23946591
CIL_0002VH CIL_0002VH_0002 CGP 3:23916545-23980618

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA:TAS ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009285 rpl15 ribosomal protein L15 protein_coding Danio_rerio
ENSMUSG00000057262 Gm10020 predicted pseudogene 10020 protein_coding Mus_musculus

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