C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L15
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000435882 RPL15-005 ENSG00000174748 9606 + 3:23917148-23919791 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverMuscleOvaryPlacentaENST00000435882
Transcript ID Bladder Breast Colon Heart Kidney Liver Muscle Ovary Placenta
ENST00000435882 14.208±0.00 25.412±0.00 32.494±0.00 19.888±0.00 51.482±0.00 57.929±0.00 36.591±0.00 45.196±0.00 116.687±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002EM CIL_0002EM_0002 CGP 3:23891660-23946591
CIL_0002VH CIL_0002VH_0002 CGP 3:23916545-23980618

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000184 TAS nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 TAS RNA binding
GO:0003735 IEA:NAS structural constituent of ribosome
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0005829 TAS cytosol
GO:0005840 IEA:TAS ribosome
GO:0006412 IEA:NAS translation
GO:0006413 TAS translational initiation
GO:0006414 TAS translational elongation
GO:0006415 TAS translational termination
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0019058 TAS viral life cycle
GO:0019083 TAS viral transcription
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0044267 TAS cellular protein metabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000080281 Rpl15-001 protein_coding Mus_musculus 0 1029
ENSMUST00000112598 Rpl15-005 protein_coding Mus_musculus 0 983
ENSMUST00000079419 Rpl15-004 protein_coding Mus_musculus 0 983
ENSMUST00000100799 Rpl15-002 protein_coding Mus_musculus 0 966
ENSMUST00000088480 Rpl15-ps3-001 processed_pseudogene Mus_musculus 0 904
ENSMUST00000105169 Gm4294-201 processed_pseudogene Mus_musculus 0 898
ENSMUST00000081993 Gm10020-201 protein_coding Mus_musculus 0 898
ENSMUST00000119496 Gm10224-001 processed_pseudogene Mus_musculus 0 881
ENSMUST00000184247 Rpl15-ps2-001 processed_pseudogene Mus_musculus 0 878
ENSMUST00000097103 Gm8420-001 processed_pseudogene Mus_musculus 0 802
ENSMUST00000120953 Gm13413-001 processed_pseudogene Mus_musculus 0 791
ENSMUST00000189382 RP23-277E3.1-001 processed_pseudogene Mus_musculus 0 776
ENSMUST00000121621 Gm12726-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000117717 Gm14094-001 processed_pseudogene Mus_musculus 0 765
ENSMUST00000122161 Gm16210-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000121557 Gm13688-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000121890 Gm12035-001 processed_pseudogene Mus_musculus 0 675
ENSMUST00000117231 Gm11191-001 processed_pseudogene Mus_musculus 0 616
ENSMUST00000073317 Gm5292-001 processed_pseudogene Mus_musculus 0 610
ENSMUST00000118944 Gm15400-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000118237 Gm11500-001 processed_pseudogene Mus_musculus 0 579
ENSMUST00000147121 Rpl15-003 protein_coding Mus_musculus 0 449
ENSMUST00000120694 Rpl15-ps1-001 processed_pseudogene Mus_musculus 0 448
ENSMUST00000122372 Rpl15-ps4-001 processed_pseudogene Mus_musculus 0 309
ENSMUST00000159873 Gm3329-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000132957 Gm15733-001 processed_pseudogene Mus_musculus 0 213

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