C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: arginine/serine-rich coiled-coil 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000174891 RSRC1 9606 + 3:158105855-158545730 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000295930 RSRC1-001 158110052-158544835 protein_coding
  ENST00000312179 RSRC1-004 158110106-158544793 protein_coding
  ENST00000464171 RSRC1-002 158110089-158545730 protein_coding
  ENST00000468344 RSRC1-009 158110149-158136898 processed_transcript
  ENST00000471911 RSRC1-005 158110156-158469732 processed_transcript
  ENST00000471994 RSRC1-003 158110068-158460962 protein_coding
  ENST00000475278 RSRC1-006 158110107-158544525 protein_coding
  ENST00000476899 RSRC1-010 158110402-158354908 protein_coding
  ENST00000477788 RSRC1-011 158122154-158354951 nonsense_mediated_decay
  ENST00000480119 RSRC1-013 158110129-158544443 nonsense_mediated_decay
  ENST00000480820 RSRC1-007 158105855-158544522 protein_coding
  ENST00000482822 RSRC1-012 158203072-158543687 protein_coding
  ENST00000494002 RSRC1-008 158107789-158203245 protein_coding
  ENST00000496268 RSRC1-014 158203138-158303575 processed_transcript
  ENST00000611884 RSRC1-201 158110052-158544834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000295930ENST00000464171ENST00000471994ENST00000475278ENST00000480119ENST00000480820ENST00000482822ENST00000494002ENST00000611884
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000295930 N/A N/A N/A N/A N/A N/A N/A 0.808±0.00 2.411±0.00 N/A N/A N/A 3.265±0.00 N/A
ENST00000464171 N/A 5.070±0.00 N/A 4.835±2.22 5.021±2.84 N/A 0.881±0.00 N/A 1.256±0.36 1.044±0.00 N/A 1.569±0.31 1.605±0.31 N/A
ENST00000471994 N/A N/A 4.190±0.00 10.903±3.44 6.026±0.00 3.563±0.00 N/A 1.501±0.00 10.574±0.00 4.273±0.00 N/A 5.187±2.61 9.164±0.00 8.245±0.00
ENST00000475278 N/A N/A 1.308±0.00 N/A N/A N/A N/A N/A N/A 2.049±0.00 N/A 2.575±0.00 N/A N/A
ENST00000480119 N/A N/A N/A N/A 2.119±0.00 N/A N/A N/A N/A N/A N/A N/A 0.708±0.00 3.435±0.00
ENST00000480820 5.354±0.00 N/A 1.341±0.00 N/A N/A 3.392±0.00 0.995±0.00 N/A N/A N/A N/A 4.868±3.96 1.001±0.02 N/A
ENST00000482822 N/A N/A N/A 9.727±0.00 N/A 2.181±0.00 N/A 0.921±0.00 2.996±0.00 2.029±0.00 2.366±0.00 N/A N/A N/A
ENST00000494002 N/A N/A N/A N/A 7.577±0.00 N/A N/A N/A 5.185±0.00 7.378±0.00 1.178±0.00 N/A N/A N/A
ENST00000611884 N/A N/A N/A N/A N/A N/A N/A 2.272±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SK CIL_0007SK_0001 VISTA 3:157571437-158172574
CIL_0008TK CIL_0008TK_0001 VISTA 3:157757953-158360211
CIL_00098J CIL_00098J_0001 VISTA 3:157833085-158434392
CIL_0007KJ CIL_0007KJ_0001 UCNEbase 3:157856332-158528467
CIL_0007SC CIL_0007SC_0001 VISTA 3:157864514-158466174
CIL_0008QV CIL_0008QV_0001 VISTA 3:157885521-158486853
CIL_0008BN CIL_0008BN_0001 VISTA 3:157971822-158572677
CIL_00086V CIL_00086V_0001 VISTA 3:157991733-158593047
CIL_0008BM CIL_0008BM_0001 VISTA 3:158007957-158609595
CIL_0008KO CIL_0008KO_0001 VISTA 3:158067861-158669043
CIL_0004JW CIL_0004JW_0002 CGP 3:158095954-158545730

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000380 IEA alternative mRNA splicing, via spliceosome
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0006913 ISS nucleocytoplasmic transport
GO:0008380 IDA RNA splicing
GO:0016607 ISS nuclear speck
GO:0046677 IEA response to antibiotic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033987 rsrc1 arginine/serine-rich coiled-coil 1 protein_coding Danio_rerio
ENSMUSG00000034544 Rsrc1 arginine/serine-rich coiled-coil 1 protein_coding Mus_musculus

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