C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: arginine/serine-rich coiled-coil 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000611884 RSRC1-201 ENSG00000174891 9606 + 3:158110052-158544834 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; KidneyENST00000611884
Transcript ID Kidney
ENST00000611884 2.272±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SK CIL_0007SK_0001 VISTA 3:157571437-158172574
CIL_0008TK CIL_0008TK_0001 VISTA 3:157757953-158360211
CIL_00098J CIL_00098J_0001 VISTA 3:157833085-158434392
CIL_0007KJ CIL_0007KJ_0001 UCNEbase 3:157856332-158528467
CIL_0007SC CIL_0007SC_0001 VISTA 3:157864514-158466174
CIL_0008QV CIL_0008QV_0001 VISTA 3:157885521-158486853
CIL_0008BN CIL_0008BN_0001 VISTA 3:157971822-158572677
CIL_00086V CIL_00086V_0001 VISTA 3:157991733-158593047
CIL_0008BM CIL_0008BM_0001 VISTA 3:158007957-158609595
CIL_0008KO CIL_0008KO_0001 VISTA 3:158067861-158669043
CIL_0004JW CIL_0004JW_0002 CGP 3:158095954-158545730

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000380 IEA alternative mRNA splicing, via spliceosome
GO:0000398 IDA mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0006468 IEA protein phosphorylation
GO:0006913 ISS nucleocytoplasmic transport
GO:0008380 IDA RNA splicing
GO:0016607 ISS nuclear speck
GO:0046677 IEA response to antibiotic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000065074 Rsrc1-002 protein_coding Mus_musculus 0 1218
ENSMUST00000161726 Rsrc1-007 protein_coding Mus_musculus 0 1153
ENSMUST00000162036 Rsrc1-001 protein_coding Mus_musculus 0 1149
ENSMUST00000162693 Rsrc1-006 protein_coding Mus_musculus 0 861
ENSMUST00000046542 Rsrc1-005 protein_coding Mus_musculus 0 835
ENSMUST00000065047 Rsrc1-004 protein_coding Mus_musculus 0 398

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