C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: arginine/serine-rich coiled-coil 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000034544 Rsrc1 10090 + 3:66981390-67358396 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000046542 Rsrc1-005 66985703-67358390 protein_coding
  ENSMUST00000065047 Rsrc1-004 66985685-67353722 protein_coding
  ENSMUST00000065074 Rsrc1-002 66985672-67358395 protein_coding
  ENSMUST00000160504 Rsrc1-008 66985978-66994711 protein_coding
  ENSMUST00000161726 Rsrc1-007 66985967-67358396 protein_coding
  ENSMUST00000162036 Rsrc1-001 66981390-67356557 protein_coding
  ENSMUST00000162362 Rsrc1-009 66985670-66996473 protein_coding
  ENSMUST00000162620 Rsrc1-003 66985685-67085227 retained_intron
  ENSMUST00000162693 Rsrc1-006 66985704-67356558 protein_coding
  ENSMUST00000182708 Rsrc1-010 66990972-66994892 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000046542ENSMUST00000065047ENSMUST00000065074ENSMUST00000161726ENSMUST00000162036ENSMUST00000162693ENSMUST00000182708
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000046542 N/A 0.712±0.00 N/A 4.364±0.00 2.104±0.00 N/A N/A 0.684±0.00 0.277±0.05 N/A N/A 1.663±0.00 1.935±0.00 N/A
ENSMUST00000065047 0.600±0.00 N/A N/A N/A N/A N/A 0.218±0.00 N/A N/A 0.728±0.00 N/A 0.655±0.26 N/A N/A
ENSMUST00000065074 1.939±0.46 N/A 4.650±0.78 4.832±2.60 0.967±0.00 0.952±0.56 0.761±0.18 1.661±0.56 1.826±1.08 1.497±0.59 3.940±0.56 4.048±3.81 3.708±1.17 3.116±0.34
ENSMUST00000161726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.267±0.56
ENSMUST00000162036 N/A N/A N/A 38.979±0.00 N/A N/A N/A N/A N/A N/A N/A 43.896±0.00 21.297±18.22 144.251±0.00
ENSMUST00000162693 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.582±0.00 N/A
ENSMUST00000182708 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.951±0.26 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SK CIL_0007SK_0002 VISTA 3:66400786-67001918
CIL_0008TK CIL_0008TK_0002 VISTA 3:66634735-67237240
CIL_0007KJ CIL_0007KJ_0002 UCNEbase 3:66683972-67341053
CIL_00098J CIL_00098J_0002 VISTA 3:66709377-67310623
CIL_0007SC CIL_0007SC_0002 VISTA 3:66736007-67337651
CIL_0008QV CIL_0008QV_0002 VISTA 3:66770295-67371594
CIL_0008BN CIL_0008BN_0002 VISTA 3:66846973-67447795
CIL_00086V CIL_00086V_0002 VISTA 3:66870618-67471970
CIL_0008BM CIL_0008BM_0002 VISTA 3:66890932-67492590
CIL_0008KO CIL_0008KO_0002 VISTA 3:66912683-67513884
CIL_0004JW CIL_0004JW_0003 CGP 3:66971727-67358396

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000380 IDA alternative mRNA splicing, via spliceosome
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006468 IDA protein phosphorylation
GO:0006913 IDA nucleocytoplasmic transport
GO:0008380 ISO RNA splicing
GO:0016607 IDA nuclear speck
GO:0046677 IDA response to antibiotic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000033987 rsrc1 arginine/serine-rich coiled-coil 1 protein_coding Danio_rerio
ENSG00000174891 RSRC1 arginine/serine-rich coiled-coil 1 protein_coding Homo_sapiens

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