C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphatidylserine synthase 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000308020 PTDSS2-001 ENSG00000174915 9606 + 11:450280-491387 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000308020
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000308020 5.217±0.00 6.357±0.00 1.231±0.00 8.523±0.00 8.226±0.00 6.881±0.00 5.992±5.26 14.493±0.00 2.688±2.38 5.293±4.42 5.554±3.50 9.335±7.71 12.289±3.02 25.572±8.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UP CIL_0002UP_0001 CGP 11:417933-491399
CIL_0003OS CIL_0003OS_0001 CGP 11:448268-507300

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003882 IEA CDP-diacylglycerol-serine O-phosphatidyltransferase activity
GO:0005622 IEA intracellular
GO:0005789 ISS endoplasmic reticulum membrane
GO:0006644 TAS phospholipid metabolic process
GO:0006659 IEA phosphatidylserine biosynthetic process
GO:0016020 ISS membrane
GO:0016021 IEA integral component of membrane
GO:0044281 TAS small molecule metabolic process
GO:0046474 TAS glycerophospholipid biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000026568 Ptdss2-001 protein_coding Mus_musculus 0 1652
ENSMUST00000174373 Ptdss2-006 nonsense_mediated_decay Mus_musculus 0 1059
ENSMUST00000174706 Ptdss2-002 retained_intron Mus_musculus 0 996
ENSDART00000092023 ptdss2-001 protein_coding Danio_rerio 0 784
ENSMUST00000172787 Ptdss2-003 protein_coding Mus_musculus 0 754
ENSMUST00000173721 Ptdss2-008 processed_transcript Mus_musculus 0 344
ENSMUST00000174612 Ptdss2-005 nonsense_mediated_decay Mus_musculus 0 305
ENSMUST00000173572 Ptdss2-007 processed_transcript Mus_musculus 0 267
ENSMUST00000174058 Ptdss2-004 nonsense_mediated_decay Mus_musculus 0 206

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