C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: signal peptide, CUB domain, EGF-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520467 SCUBE2-001 ENSG00000175356 9606 - 11:9020884-9091599 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastHeartLiverLungOvaryPlacentaTestisENST00000520467
Transcript ID Adipose Brain Breast Heart Liver Lung Ovary Placenta Testis
ENST00000520467 5.699±0.00 0.232±0.02 6.248±0.00 0.137±0.13 2.385±0.00 0.185±0.00 0.420±0.00 3.235±1.56 0.682±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Q2 CIL_0008Q2_0001 VISTA 11:8432154-9033661
CIL_000498 CIL_000498_0001 CGP 11:8980576-9138114
CIL_000499 CIL_000499_0001 CGP 11:9020391-9265390

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106729 Scube2-001 protein_coding Mus_musculus 0 3482
ENSMUST00000007423 Scube2-004 protein_coding Mus_musculus 0 1642
ENSMUST00000106728 Scube2-003 protein_coding Mus_musculus 0 1502
ENSMUST00000132113 Scube2-002 processed_transcript Mus_musculus 0 1339
ENSMUST00000138946 Scube2-005 processed_transcript Mus_musculus 0 479

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