C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000602351 PPFIA3-006 ENSG00000177380 9606 + 19:49127874-49151026 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverOvaryPlacentaTestisENST00000602351
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Ovary Placenta Testis
ENST00000602351 0.134±0.00 0.475±0.00 7.492±0.00 0.271±0.00 0.016±0.00 0.571±0.00 0.070±0.00 0.878±0.75 0.250±0.00 1.147±0.47

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005737 IEA cytoplasm
GO:0007160 IEA cell-matrix adhesion
GO:0007165 IEA signal transduction
GO:0007269 ISS neurotransmitter secretion
GO:0048172 ISS regulation of short-term neuronal synaptic plasticity
GO:0048786 IEA:TAS presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003961 Ppfia3-201 protein_coding Mus_musculus 0 4327
ENSMUST00000107779 Ppfia3-001 protein_coding Mus_musculus 0 4327
ENSMUST00000137578 Ppfia3-003 protein_coding Mus_musculus 0 4309
ENSMUST00000131154 Ppfia3-002 retained_intron Mus_musculus 0 2230
ENSMUST00000151970 Ppfia3-005 processed_transcript Mus_musculus 0 719
ENSMUST00000130143 Ppfia3-004 processed_transcript Mus_musculus 0 538
ENSDART00000010885 PPFIA1-201 protein_coding Danio_rerio 0 307
ENSMUST00000189361 Ppfia4-003 protein_coding Mus_musculus 0 222
ENSMUST00000168515 Ppfia4-001 protein_coding Mus_musculus 0 222

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