C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: adaptor-related protein complex 3, sigma 1 subunit
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000177879 AP3S1 9606 + 5:115841481-115914081 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000316788 AP3S1-001 115841481-115914081 protein_coding
  ENST00000395548 AP3S1-003 115841997-115914011 retained_intron
  ENST00000505423 AP3S1-006 115895087-115913900 processed_transcript
  ENST00000506430 AP3S1-008 115841958-115913457 nonsense_mediated_decay
  ENST00000507436 AP3S1-007 115866661-115895162 retained_intron
  ENST00000509055 AP3S1-005 115842487-115870131 retained_intron
  ENST00000514118 AP3S1-004 115841592-115870131 processed_transcript
  ENST00000515066 AP3S1-002 115841946-115904088 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316788ENST00000395548ENST00000505423ENST00000506430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316788 19.097±0.00 15.584±0.00 N/A 15.078±0.00 16.069±0.00 24.276±0.00 7.549±0.00 10.245±0.00 7.287±0.00 22.687±0.00 4.918±0.00 22.540±14.77 28.690±3.17 20.712±9.81
ENST00000395548 17.277±0.00 11.893±0.00 N/A 12.974±0.00 11.856±0.26 8.526±3.34 2.561±0.00 5.763±0.13 10.466±5.63 6.608±0.00 2.462±0.00 10.326±0.56 N/A 14.719±1.74
ENST00000505423 N/A N/A N/A 21.025±0.00 17.395±0.00 N/A N/A 12.061±0.00 7.601±0.00 N/A 7.152±0.00 N/A N/A N/A
ENST00000506430 N/A N/A 10.149±0.00 18.795±0.00 19.036±0.00 10.283±0.00 4.679±0.00 9.112±0.00 N/A 10.197±0.00 N/A 11.720±0.00 16.262±0.00 26.525±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L5 CIL_0004L5_0001 CGP 5:115804733-115841858
CIL_0004L6 CIL_0004L6_0001 CGP 5:115828200-115914081

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005215 NAS transporter activity
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0008089 ISS anterograde axon cargo transport
GO:0008286 TAS insulin receptor signaling pathway
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030117 IEA membrane coat
GO:0030119 TAS AP-type membrane coat adaptor complex
GO:0030123 IDA AP-3 adaptor complex
GO:0030133 TAS transport vesicle
GO:0048490 ISS anterograde synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSMUSG00000024480 Ap3s1 adaptor-related protein complex 3, sigma 1 subunit protein_coding Mus_musculus

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