C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 3, sigma 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000316788 AP3S1-001 ENSG00000177879 9606 + 5:115841481-115914081 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000316788
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000316788 19.097±0.00 15.584±0.00 15.078±0.00 16.069±0.00 24.276±0.00 7.549±0.00 10.245±0.00 7.287±0.00 22.687±0.00 4.918±0.00 22.540±14.77 28.690±3.17 20.712±9.81

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L5 CIL_0004L5_0001 CGP 5:115804733-115841858
CIL_0004L6 CIL_0004L6_0001 CGP 5:115828200-115914081

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 NAS transporter activity
GO:0005515 IPI protein binding
GO:0005794 IEA Golgi apparatus
GO:0006810 IEA transport
GO:0006886 IEA intracellular protein transport
GO:0008089 ISS anterograde axon cargo transport
GO:0008286 TAS insulin receptor signaling pathway
GO:0008565 IEA protein transporter activity
GO:0015031 IEA protein transport
GO:0030119 TAS AP-type membrane coat adaptor complex
GO:0030123 IDA AP-3 adaptor complex
GO:0030133 TAS transport vesicle
GO:0048490 ISS anterograde synaptic vesicle transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025357 Ap3s1-201 protein_coding Mus_musculus 0 1688
ENSMUST00000178107 Ap3s1-ps2-201 processed_pseudogene Mus_musculus 0 893
ENSMUST00000117113 Ap3s1-ps1-001 processed_pseudogene Mus_musculus 0 887
ENSMUST00000164712 Gm17149-001 processed_pseudogene Mus_musculus 0 479

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