C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: adaptor-related protein complex 3, sigma 1 subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000395548 AP3S1-003 ENSG00000177879 9606 + 5:115841997-115914011 retained_intron

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000395548
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000395548 17.277±0.00 11.893±0.00 12.974±0.00 11.856±0.26 8.526±3.34 2.561±0.00 5.763±0.13 10.466±5.63 6.608±0.00 2.462±0.00 10.326±0.56 14.719±1.74

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004L5 CIL_0004L5_0001 CGP 5:115804733-115841858
CIL_0004L6 CIL_0004L6_0001 CGP 5:115828200-115914081

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025357 Ap3s1-201 protein_coding Mus_musculus 0 1380
ENSMUST00000117113 Ap3s1-ps1-001 processed_pseudogene Mus_musculus 0 787
ENSMUST00000178107 Ap3s1-ps2-201 processed_pseudogene Mus_musculus 0 787
ENSMUST00000164712 Gm17149-001 processed_pseudogene Mus_musculus 0 479

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