C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: histocompatibility (minor) HA-1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000180448 HMHA1 9606 + 19:1065923-1086628 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000313093 HMHA1-002 1067166-1086628 protein_coding
  ENST00000539243 HMHA1-001 1065923-1086628 protein_coding
  ENST00000543365 HMHA1-004 1071221-1086628 protein_coding
  ENST00000586033 HMHA1-014 1073583-1074724 retained_intron
  ENST00000586378 HMHA1-017 1082784-1085996 retained_intron
  ENST00000586866 HMHA1-007 1067498-1086628 protein_coding
  ENST00000586937 HMHA1-015 1081415-1082956 retained_intron
  ENST00000587186 HMHA1-010 1066509-1073223 protein_coding
  ENST00000587602 HMHA1-006 1067317-1086628 nonsense_mediated_decay
  ENST00000590214 HMHA1-003 1067327-1086626 protein_coding
  ENST00000590512 HMHA1-016 1082521-1083329 processed_transcript
  ENST00000590577 HMHA1-005 1077487-1086628 protein_coding
  ENST00000591169 HMHA1-012 1082939-1086628 nonsense_mediated_decay
  ENST00000591293 HMHA1-011 1067319-1080961 retained_intron
  ENST00000592297 HMHA1-009 1082841-1086600 retained_intron
  ENST00000592335 HMHA1-013 1071513-1073549 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastHeartLiverLungPlacentaENST00000313093ENST00000543365ENST00000590577ENST00000591169
Transcript ID Adrenal Bladder Breast Heart Liver Lung Placenta
ENST00000313093 28.504±0.00 0.451±0.00 1.754±0.00 N/A 0.982±0.00 8.462±6.00 11.658±0.18
ENST00000543365 N/A N/A N/A 0.424±0.00 N/A N/A 8.173±0.00
ENST00000590577 N/A N/A N/A N/A N/A 19.377±0.00 N/A
ENST00000591169 75.799±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0000HU CIL_0000HU_0001 CGP 19:1040101-1086628
CIL_00030S CIL_00030S_0001 CGP 19:1065923-1095380

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0016020 IDA membrane
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052496 HMHA1 (1 of 2) histocompatibility (minor) HA-1 protein_coding Danio_rerio
ENSDARG00000062049 hmha1 histocompatibility (minor) HA-1 protein_coding Danio_rerio
ENSMUSG00000035697 Hmha1 histocompatibility (minor) HA-1 protein_coding Mus_musculus

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