C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility (minor) HA-1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000313093 HMHA1-002 ENSG00000180448 9606 + 19:1067166-1086628 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastLiverLungPlacentaENST00000313093
Transcript ID Adrenal Bladder Breast Liver Lung Placenta
ENST00000313093 28.504±0.00 0.451±0.00 1.754±0.00 0.982±0.00 8.462±6.00 11.658±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0001 VISTA 19:477571-1083531
CIL_0000HU CIL_0000HU_0001 CGP 19:1040101-1086628
CIL_00030S CIL_00030S_0001 CGP 19:1065923-1095380

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005622 IEA intracellular
GO:0005829 TAS cytosol
GO:0007165 IEA signal transduction
GO:0007264 TAS small GTPase mediated signal transduction
GO:0016020 IDA membrane
GO:0035556 IEA intracellular signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0046872 IEA metal ion binding
GO:0051056 TAS regulation of small GTPase mediated signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099501 Hmha1-001 protein_coding Mus_musculus 0 2394
ENSMUST00000105373 Hmha1-002 protein_coding Mus_musculus 0 2329
ENSMUST00000043311 Hmha1-004 protein_coding Mus_musculus 0 2156
ENSMUST00000140974 Hmha1-003 retained_intron Mus_musculus 0 1729

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