C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00030S_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000180448-ENSG00000099817 CGP 9606 19:1065923-1095380
GeneTranscriptPositionBiotype
ENSG00000099817 (POLR2E)
polymerase (RNA) II (DNA directed) polypeptide E, 25kDa 		ENST00000215587 (POLR2E-012) 1088163-1095374 nonsense_mediated_decay
ENST00000585838 (POLR2E-014) 1088645-1095261 protein_coding
ENST00000586215 (POLR2E-008) 1088424-1089930 retained_intron
ENST00000586746 (POLR2E-010) 1086579-1095354 protein_coding
ENST00000586817 (POLR2E-003) 1088167-1095375 retained_intron
ENST00000589737 (POLR2E-006) 1088148-1095375 nonsense_mediated_decay
ENST00000590060 (POLR2E-007) 1086595-1092346 nonsense_mediated_decay
ENST00000591709 (POLR2E-005) 1091501-1095361 retained_intron
ENST00000591767 (POLR2E-002) 1088148-1095336 nonsense_mediated_decay
ENST00000592597 (POLR2E-004) 1093730-1095349 retained_intron
ENST00000612655 (POLR2E-013) 1087645-1095380 protein_coding
ENST00000614705 (POLR2E-011) 1089897-1095354 processed_transcript
ENST00000615234 (POLR2E-001) 1086579-1095357 protein_coding
ENST00000619917 (POLR2E-009) 1088388-1095366 protein_coding
ENSG00000180448 (HMHA1)
histocompatibility (minor) HA-1 		ENST00000313093 (HMHA1-002) 1067166-1086628 protein_coding
ENST00000539243 (HMHA1-001) 1065923-1086628 protein_coding
ENST00000543365 (HMHA1-004) 1071221-1086628 protein_coding
ENST00000586033 (HMHA1-014) 1073583-1074724 retained_intron
ENST00000586378 (HMHA1-017) 1082784-1085996 retained_intron
ENST00000586866 (HMHA1-007) 1067498-1086628 protein_coding
ENST00000586937 (HMHA1-015) 1081415-1082956 retained_intron
ENST00000587186 (HMHA1-010) 1066509-1073223 protein_coding
ENST00000587602 (HMHA1-006) 1067317-1086628 nonsense_mediated_decay
ENST00000590214 (HMHA1-003) 1067327-1086626 protein_coding
ENST00000590512 (HMHA1-016) 1082521-1083329 processed_transcript
ENST00000590577 (HMHA1-005) 1077487-1086628 protein_coding
ENST00000591169 (HMHA1-012) 1082939-1086628 nonsense_mediated_decay
ENST00000591293 (HMHA1-011) 1067319-1080961 retained_intron
ENST00000592297 (HMHA1-009) 1082841-1086600 retained_intron
ENST00000592335 (HMHA1-013) 1071513-1073549 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_00030S_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035697-ENSMUSG00000004667 CGP 10090 10:80016653-80039795
GeneTranscriptPositionBiotype
ENSMUSG00000004667 (Polr2e)
polymerase (RNA) II (DNA directed) polypeptide E 		ENSMUST00000004786 (Polr2e-001) 80035949-80039795 protein_coding
ENSMUST00000131743 (Polr2e-003) 80035951-80039650 retained_intron
ENSMUST00000143438 (Polr2e-002) 80035949-80039710 retained_intron
ENSMUST00000147507 (Polr2e-004) 80035949-80037185 retained_intron
ENSMUST00000152843 (Polr2e-005) 80036175-80039701 retained_intron
ENSMUSG00000035697 (Hmha1)
histocompatibility (minor) HA-1 		ENSMUST00000043311 (Hmha1-004) 80019653-80031468 protein_coding
ENSMUST00000099501 (Hmha1-001) 80016653-80031472 protein_coding
ENSMUST00000105373 (Hmha1-002) 80016916-80031469 protein_coding
ENSMUST00000140974 (Hmha1-003) 80016739-80031469 retained_intron
ENSMUST00000150022 (Hmha1-005) 80021743-80031462 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030S_0001ENSG00000099817ENST00000215587ENST00000585838ENST00000589737ENST00000591767ENST00000612655ENST00000614705ENST00000615234ENST00000619917ENSG00000180448ENST00000313093ENST00000543365ENST00000590577ENST00000591169CIL_00030S_0002ENSMUSG00000004667ENSMUST00000004786ENSMUST00000143438ENSMUST00000152843ENSMUSG00000035697ENSMUST00000043311ENSMUST00000099501ENSMUST00000105373ENSMUST00000140974ENSMUST00000150022
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000099817 ENST00000215587 48.025±0.00 N/A 1.298±0.00 12.318±6.61 63.832±0.00 35.050±0.00 14.471±13.44 43.041±0.00 23.709±20.35 61.080±0.00 21.516±18.99 32.859±18.13 67.599±15.21 41.823±6.38
ENST00000585838 N/A N/A 2.931±0.00 N/A N/A N/A 26.215±0.00 43.582±0.00 36.608±0.00 N/A 52.571±0.00 5.772±0.00 N/A N/A
ENST00000586215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586746 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586817 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589737 N/A N/A N/A 2.852±0.00 N/A N/A N/A N/A N/A N/A N/A 44.939±7.18 70.570±4.09 N/A
ENST00000590060 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591709 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591767 N/A N/A N/A N/A N/A N/A 2.342±0.00 N/A N/A N/A N/A 23.306±0.00 42.282±0.00 21.872±0.00
ENST00000592597 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612655 N/A N/A N/A 3.361±0.00 N/A 2.126±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614705 N/A N/A N/A N/A N/A N/A N/A 17.977±0.00 N/A N/A N/A 27.315±23.56 N/A N/A
ENST00000615234 11.151±0.00 23.508±0.00 0.717±0.00 4.976±4.31 17.773±0.00 3.728±2.87 3.701±0.00 7.476±0.00 3.482±1.53 N/A N/A 7.984±0.00 N/A 6.785±1.10
ENST00000619917 58.223±0.00 N/A N/A 32.031±0.00 77.633±0.00 50.663±0.00 N/A 25.111±0.00 N/A N/A N/A N/A N/A 42.859±0.00
ENSG00000180448 ENST00000313093 N/A 28.504±0.00 0.451±0.00 N/A 1.754±0.00 N/A N/A N/A 0.982±0.00 8.462±6.00 N/A N/A 11.658±0.18 N/A
ENST00000539243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000543365 N/A N/A N/A N/A N/A N/A 0.424±0.00 N/A N/A N/A N/A N/A 8.173±0.00 N/A
ENST00000586033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586378 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000586937 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587186 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590214 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590577 N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.377±0.00 N/A N/A N/A N/A
ENST00000591169 N/A 75.799±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000591293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592297 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000004667 ENSMUST00000004786 74.301±6.94 44.822±2.24 66.328±16.18 52.639±27.14 53.979±18.30 67.738±8.87 73.516±11.69 92.988±3.27 58.354±35.62 86.455±3.70 22.887±0.92 124.915±47.21 83.526±35.90 39.076±14.84
ENSMUST00000131743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143438 N/A 3.674±0.31 N/A N/A 4.588±1.63 4.498±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147507 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152843 N/A N/A 12.076±0.00 17.457±5.48 N/A 15.864±1.34 N/A N/A N/A N/A N/A 25.545±11.69 17.535±0.00 N/A
ENSMUSG00000035697 ENSMUST00000043311 6.890±4.27 1.513±0.31 4.552±0.48 0.464±0.04 11.436±2.63 3.167±0.37 0.940±0.56 1.520±0.07 2.520±1.42 13.026±1.13 0.476±0.39 5.642±2.33 1.598±0.36 0.857±0.16
ENSMUST00000099501 3.688±0.43 3.609±0.73 2.254±0.69 0.465±0.01 54.882±22.83 5.255±2.42 1.764±0.73 2.747±1.66 7.130±5.48 18.775±2.65 0.813±0.85 2.278±0.73 0.722±0.23 0.240±0.05
ENSMUST00000105373 1.596±0.22 1.266±0.00 N/A N/A N/A N/A N/A 2.058±0.00 1.261±0.66 N/A 0.720±0.56 N/A 0.486±0.00 N/A
ENSMUST00000140974 4.402±0.98 1.254±0.00 1.462±0.30 0.166±0.00 47.235±1.96 3.585±1.16 0.507±0.18 1.871±0.65 3.428±1.76 7.979±0.38 0.233±0.04 2.026±0.69 0.665±0.14 N/A
ENSMUST00000150022 2.757±0.00 2.061±0.66 N/A 0.339±0.00 31.367±1.34 3.166±0.54 2.078±1.08 2.090±0.31 1.810±1.05 8.761±0.54 0.161±0.03 2.305±0.00 0.504±0.00 0.172±0.00

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