C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: homeobox C9
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000180806 HOXC9 9606 + 12:53994895-54003337 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000303450 HOXC9-001 54000119-54003337 protein_coding
  ENST00000504557 HOXC9-003 53994895-54002888 processed_transcript
  ENST00000508190 HOXC9-002 53995509-54003298 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastLiverMusclePlacentaTestisENST00000303450ENST00000504557
Transcript ID Adipose Bladder Breast Liver Muscle Placenta Testis
ENST00000303450 9.746±0.00 N/A 4.995±0.00 N/A N/A 2.032±0.75 7.326±0.00
ENST00000504557 N/A 5.839±0.00 N/A 0.363±0.00 2.579±0.00 N/A 3.368±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TN CIL_0002TN_0002 CGP 12:53994895-54012362

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000092809 hoxc9a homeo box C9a protein_coding Danio_rerio
ENSMUSG00000036139 Hoxc9 homeobox C9 protein_coding Mus_musculus

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