C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox C9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000303450 HOXC9-001 ENSG00000180806 9606 + 12:54000119-54003337 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastPlacentaTestisENST00000303450
Transcript ID Adipose Breast Placenta Testis
ENST00000303450 9.746±0.00 4.995±0.00 2.032±0.75 7.326±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TN CIL_0002TN_0002 CGP 12:53994895-54012362

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0009952 IEA anterior/posterior pattern specification
GO:0043565 IEA sequence-specific DNA binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048706 IEA embryonic skeletal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001706 Hoxc9-001 protein_coding Mus_musculus 0 1784
ENSMUST00000114425 Hoxa9-002 protein_coding Mus_musculus 2.8026e-45 187
ENSMUST00000154641 Hoxa9-004 processed_transcript Mus_musculus 2.8026e-45 187
ENSMUST00000048680 Hoxa9-001 protein_coding Mus_musculus 2.8026e-45 187
ENSMUST00000173306 Hoxc9-002 protein_coding Mus_musculus 7e-36 156
ENSMUST00000156540 Hoxa9-003 processed_transcript Mus_musculus 6e-32 143

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