C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: homeobox C9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000504557 HOXC9-003 ENSG00000180806 9606 + 12:53994895-54002888 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverMuscleTestisENST00000504557
Transcript ID Bladder Liver Muscle Testis
ENST00000504557 5.839±0.00 0.363±0.00 2.579±0.00 3.368±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0001 VISTA 12:53396852-53997557
CIL_0007SU CIL_0007SU_0001 VISTA 12:53718454-54321661
CIL_00084M CIL_00084M_0001 VISTA 12:53732854-54334005
CIL_0002TN CIL_0002TN_0002 CGP 12:53994895-54012362

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000001706 Hoxc9-001 protein_coding Mus_musculus 0 619
ENSMUST00000114425 Hoxa9-002 protein_coding Mus_musculus 1.4013e-45 187
ENSMUST00000154641 Hoxa9-004 processed_transcript Mus_musculus 1.4013e-45 187
ENSMUST00000048680 Hoxa9-001 protein_coding Mus_musculus 1.4013e-45 187
ENSMUST00000156540 Hoxa9-003 processed_transcript Mus_musculus 2e-32 143

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