C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | homeobox C9 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENST00000508190  |
HOXC9-002 |
ENSG00000180806 |
9606 | + |
12:53995509-54003298  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0009B4 | CIL_0009B4_0001 | VISTA | 12:53396852-53997557 |
| CIL_0007SU | CIL_0007SU_0001 | VISTA | 12:53718454-54321661 |
| CIL_00084M | CIL_00084M_0001 | VISTA | 12:53732854-54334005 |
| CIL_0002TN | CIL_0002TN_0002 | CGP | 12:53994895-54012362 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0003677 | IEA | DNA binding |
| GO:0005634 | IEA | nucleus |
| GO:0006351 | IEA | transcription, DNA-templated |
| GO:0006355 | IEA | regulation of transcription, DNA-templated |
| GO:0043565 | IEA | sequence-specific DNA binding |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSMUST00000001706
|
Hoxc9-001 | protein_coding | Mus_musculus | 0 | 1766 |
|
ENSMUST00000114425
|
Hoxa9-002 | protein_coding | Mus_musculus | 2.8026e-45 | 187 |
|
ENSMUST00000154641
|
Hoxa9-004 | processed_transcript | Mus_musculus | 2.8026e-45 | 187 |
|
ENSMUST00000048680
|
Hoxa9-001 | protein_coding | Mus_musculus | 2.8026e-45 | 187 |
|
ENSMUST00000156540
|
Hoxa9-003 | processed_transcript | Mus_musculus | 6e-32 | 143 |
|
ENSMUST00000173306
|
Hoxc9-002 | protein_coding | Mus_musculus | 3e-30 | 137 |
