C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal sequence receptor, delta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000180879 SSR4 9606 + X:153793516-153798505 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000320857 SSR4-005 153793516-153798498 protein_coding
  ENST00000370085 SSR4-001 153794674-153798498 protein_coding
  ENST00000370086 SSR4-006 153794639-153798505 protein_coding
  ENST00000370087 SSR4-009 153794191-153798498 protein_coding
  ENST00000447375 SSR4-004 153797624-153798498 retained_intron
  ENST00000460616 SSR4-008 153794659-153798493 processed_transcript
  ENST00000471724 SSR4-011 153794676-153797503 processed_transcript
  ENST00000471880 SSR4-012 153794679-153798493 processed_transcript
  ENST00000482902 SSR4-007 153794449-153798493 processed_transcript
  ENST00000485612 SSR4-003 153796252-153798497 processed_transcript
  ENST00000486204 SSR4-002 153795048-153798497 processed_transcript
  ENST00000491833 SSR4-010 153794175-153796342 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000370086ENST00000370087
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000370086 125.797±0.00 337.682±0.00 7.192±0.00 12.383±0.00 57.359±47.89 71.026±53.58 16.314±8.64 52.026±37.81 169.550±151.74 139.811±127.61 6.769±0.00 126.471±71.65 193.929±80.48 111.914±63.92
ENST00000370087 N/A N/A N/A 52.267±0.00 18.564±14.34 N/A 29.381±0.00 37.130±33.59 N/A N/A 57.343±0.00 N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UV CIL_0001UV_0001 CGP X:153776412-153794523
CIL_0001UU CIL_0001UU_0001 CGP X:153785766-153798505
CIL_0001UT CIL_0001UT_0001 CGP X:153793516-153830565

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005783 IEA endoplasmic reticulum
GO:0005784 NAS Sec61 translocon complex
GO:0006412 TAS translation
GO:0006614 TAS SRP-dependent cotranslational protein targeting to membrane
GO:0010467 TAS gene expression
GO:0016021 IEA integral component of membrane
GO:0044267 TAS cellular protein metabolic process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019444 ssr4 signal sequence receptor, delta protein_coding Danio_rerio
ENSMUSG00000002014 Ssr4 signal sequence receptor, delta protein_coding Mus_musculus

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