C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: signal sequence receptor, delta
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002014 Ssr4 10090 + X:73787028-73790830 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000002090 Ssr4-001 73787062-73790826 protein_coding
  ENSMUST00000129239 Ssr4-007 73788844-73790830 retained_intron
  ENSMUST00000130738 Ssr4-002 73787224-73790811 retained_intron
  ENSMUST00000136544 Ssr4-004 73787182-73789092 retained_intron
  ENSMUST00000141721 Ssr4-003 73787184-73790826 retained_intron
  ENSMUST00000142829 Ssr4-006 73787265-73790163 retained_intron
  ENSMUST00000155552 Ssr4-005 73787184-73790332 retained_intron
  ENSMUST00000166518 Ssr4-201 73787028-73790824 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000002090ENSMUST00000129239ENSMUST00000130738ENSMUST00000136544ENSMUST00000141721ENSMUST00000142829ENSMUST00000166518
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000002090 23.297±3.47 44.050±4.63 29.974±6.96 10.038±4.72 23.932±2.94 44.797±7.58 11.055±2.43 28.898±1.63 50.069±10.16 23.415±3.99 12.628±1.89 28.274±4.60 64.778±16.24 3.288±1.63
ENSMUST00000129239 N/A N/A N/A 8.559±6.38 N/A N/A N/A N/A N/A N/A N/A 10.650±4.75 N/A N/A
ENSMUST00000130738 N/A N/A N/A 0.614±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136544 N/A N/A N/A 18.158±0.00 N/A N/A N/A N/A N/A N/A N/A 54.822±6.33 120.814±31.09 4.386±0.00
ENSMUST00000141721 5.631±0.26 N/A 4.476±1.15 4.132±1.10 4.371±0.53 N/A 1.744±0.17 N/A 6.025±1.36 3.277±0.09 N/A 6.527±2.01 4.741±0.00 0.885±0.02
ENSMUST00000142829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.934±0.00
ENSMUST00000166518 72.778±3.52 111.164±5.42 63.918±12.66 30.715±8.05 68.284±15.60 111.269±9.44 34.850±4.75 90.390±7.87 92.535±16.71 54.468±22.11 31.338±3.51 74.662±12.92 100.573±11.93 16.393±8.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UU CIL_0001UU_0002 CGP X:73778963-73790830
CIL_0001UT CIL_0001UT_0002 CGP X:73787028-73824969

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005783 IEA endoplasmic reticulum
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000019444 ssr4 signal sequence receptor, delta protein_coding Danio_rerio
ENSG00000180879 SSR4 signal sequence receptor, delta protein_coding Homo_sapiens

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