C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367208 SNRPE-004 ENSG00000182004 9606 + 1:203863625-203870051 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaENST00000367208
Transcript ID Ovary Placenta
ENST00000367208 36.207±21.52 34.121±5.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0005681 IEA spliceosomal complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172079 Snrpe-005 nonsense_mediated_decay Mus_musculus 0 305
ENSMUST00000166915 Snrpe-001 protein_coding Mus_musculus 0 305
ENSMUST00000121967 Gm14284-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000164096 Snrpe-002 protein_coding Mus_musculus 0 217
ENSMUST00000118757 Gm15553-001 processed_pseudogene Mus_musculus 0 187
ENSMUST00000166291 Snrpe-003 protein_coding Mus_musculus 1e-17 94
ENSMUST00000171264 Snrpe-007 protein_coding Mus_musculus 2e-16 90

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