C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000414487 SNRPE-001 ENSG00000182004 9606 + 1:203861615-203870550 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000414487
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000414487 5.156±0.00 4.077±0.00 11.198±0.00 9.560±0.00 5.385±1.46 3.400±2.10 5.915±0.29 6.778±4.52 4.061±2.28 3.490±2.09 11.835±0.85 12.802±3.13 4.720±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000245 NAS spliceosomal complex assembly
GO:0000387 IDA spliceosomal snRNP assembly
GO:0000398 IEA:IC mRNA splicing, via spliceosome
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005681 IEA:NAS spliceosomal complex
GO:0005683 IDA U7 snRNP
GO:0005685 IDA U1 snRNP
GO:0005687 IDA U4 snRNP
GO:0005689 IDA U12-type spliceosomal complex
GO:0005829 IDA cytosol
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0008334 TAS histone mRNA metabolic process
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0030532 NAS small nuclear ribonucleoprotein complex
GO:0031124 TAS mRNA 3'-end processing
GO:0034660 TAS ncRNA metabolic process
GO:0034709 IDA methylosome
GO:0034715 IDA pICln-Sm protein complex
GO:0034719 IDA SMN-Sm protein complex
GO:0042633 IMP hair cycle
GO:0070062 IDA extracellular vesicular exosome
GO:0071013 IDA catalytic step 2 spliceosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000166915 Snrpe-001 protein_coding Mus_musculus 0 442
ENSMUST00000121967 Gm14284-001 processed_pseudogene Mus_musculus 0 399
ENSMUST00000164096 Snrpe-002 protein_coding Mus_musculus 0 353
ENSMUST00000172079 Snrpe-005 nonsense_mediated_decay Mus_musculus 0 344
ENSMUST00000118757 Gm15553-001 processed_pseudogene Mus_musculus 0 228
ENSMUST00000166291 Snrpe-003 protein_coding Mus_musculus 4e-17 94
ENSMUST00000171264 Snrpe-007 protein_coding Mus_musculus 5e-16 90

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