C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: small nuclear ribonucleoprotein polypeptide E
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000475035 SNRPE-005 ENSG00000182004 9606 + 1:203861603-203870084 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000475035
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000475035 15.893±0.00 13.134±0.00 17.882±0.00 10.198±0.00 14.786±0.00 11.282±0.00 24.725±0.00 18.970±0.00 19.192±0.00 11.103±0.00 36.140±12.07 15.215±8.26 17.780±5.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096T CIL_00096T_0001 VISTA 1:203391843-203993678
CIL_0008W2 CIL_0008W2_0001 VISTA 1:203635137-204239984
CIL_0000TU CIL_0000TU_0002 CGP 1:203861603-204127743

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172079 Snrpe-005 nonsense_mediated_decay Mus_musculus 0 355
ENSMUST00000166915 Snrpe-001 protein_coding Mus_musculus 0 344
ENSMUST00000121967 Gm14284-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000164096 Snrpe-002 protein_coding Mus_musculus 0 255
ENSMUST00000118757 Gm15553-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000166291 Snrpe-003 protein_coding Mus_musculus 2e-17 94
ENSMUST00000171264 Snrpe-007 protein_coding Mus_musculus 3e-16 90

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