C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trafficking protein, kinesin binding 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000182606 TRAK1 9606 + 3:42013802-42225889 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000327628 TRAK1-004 42091070-42225768 protein_coding
  ENST00000341421 TRAK1-002 42160169-42212623 protein_coding
  ENST00000396175 TRAK1-001 42160169-42225889 protein_coding
  ENST00000418790 TRAK1-009 42149359-42184757 nonsense_mediated_decay
  ENST00000427771 TRAK1-007 42193077-42202754 protein_coding
  ENST00000449246 TRAK1-003 42149235-42204189 protein_coding
  ENST00000469506 TRAK1-008 42160212-42184923 processed_transcript
  ENST00000484786 TRAK1-005 42087200-42202906 processed_transcript
  ENST00000487159 TRAK1-006 42013802-42225889 processed_transcript
  ENST00000613405 TRAK1-201 42149235-42212615 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000327628ENST00000341421ENST00000396175ENST00000449246ENST00000484786ENST00000487159ENST00000613405
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000327628 N/A N/A N/A 5.187±1.85 N/A 1.514±0.00 N/A N/A N/A 2.065±0.00 N/A 1.259±0.00 N/A 1.684±0.00
ENST00000341421 N/A 3.812±0.00 N/A N/A 3.843±0.20 4.452±0.00 N/A 1.378±0.00 3.669±0.00 2.966±1.68 N/A 3.825±2.37 3.946±1.11 2.743±0.12
ENST00000396175 N/A N/A 2.070±0.00 N/A N/A 1.195±0.00 N/A 2.392±0.00 N/A N/A N/A 2.866±0.00 N/A 1.235±0.00
ENST00000449246 N/A N/A N/A N/A N/A N/A 3.670±0.00 N/A N/A N/A 15.408±2.55 N/A N/A N/A
ENST00000484786 N/A N/A 7.562±0.00 4.508±0.00 4.737±0.00 8.422±0.00 11.700±0.00 0.708±0.00 7.988±0.00 2.677±0.00 26.816±5.00 2.668±0.00 N/A N/A
ENST00000487159 5.940±0.00 9.616±0.00 N/A 6.970±0.00 10.471±0.00 2.378±0.10 10.296±0.00 5.176±0.00 1.235±0.61 8.997±0.00 3.603±0.00 4.914±1.52 4.071±1.08 4.230±1.17
ENST00000613405 N/A N/A N/A N/A N/A N/A N/A 1.393±0.00 N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000484 CIL_000484_0001 CGP 3:41246599-42225889
CIL_0007RR CIL_0007RR_0001 VISTA 3:41771738-42373225
CIL_000483 CIL_000483_0001 CGP 3:42013802-42266207

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005769 IDA early endosome
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0006493 ISS protein O-linked glycosylation
GO:0006605 ISS protein targeting
GO:0008333 IDA endosome to lysosome transport
GO:0050811 IEA GABA receptor binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000041304 trak1 trafficking protein, kinesin binding 1 protein_coding Danio_rerio
ENSDARG00000077730 TRAK1 (2 of 3) trafficking protein, kinesin binding 1 protein_coding Danio_rerio
ENSDARG00000090674 TRAK1 (3 of 3) trafficking protein, kinesin binding 1 protein_coding Danio_rerio
ENSMUSG00000032536 Trak1 trafficking protein, kinesin binding 1 protein_coding Mus_musculus

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