C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trafficking protein, kinesin binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000341421 TRAK1-002 ENSG00000182606 9606 + 3:42160169-42212623 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENST00000341421
Transcript ID Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENST00000341421 3.812±0.00 3.843±0.20 4.452±0.00 1.378±0.00 3.669±0.00 2.966±1.68 3.825±2.37 3.946±1.11 2.743±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000484 CIL_000484_0001 CGP 3:41246599-42225889
CIL_0007RR CIL_0007RR_0001 VISTA 3:41771738-42373225
CIL_000483 CIL_000483_0001 CGP 3:42013802-42266207

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005769 IDA early endosome
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0006493 ISS protein O-linked glycosylation
GO:0006605 ISS protein targeting
GO:0008333 IDA endosome to lysosome transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045903 Trak1-201 protein_coding Mus_musculus 0 2084
ENSDART00000085678 trak1-201 protein_coding Danio_rerio 0 556
ENSDART00000136936 trak1-001 protein_coding Danio_rerio 0 556
ENSDART00000142161 trak1-002 processed_transcript Danio_rerio 1e-33 150

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