C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: nebulin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000183091 NEB 9606 - 2:151485336-151734487 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000172853 NEB-201 151485339-151734487 protein_coding
  ENST00000397337 NEB-004 151485339-151508042 protein_coding
  ENST00000397345 NEB-202 151485339-151734487 protein_coding
  ENST00000409198 NEB-001 151485336-151734487 protein_coding
  ENST00000413693 NEB-002 151485341-151583619 protein_coding
  ENST00000420924 NEB-006 151531827-151540747 protein_coding
  ENST00000421461 NEB-014 151493353-151506993 protein_coding
  ENST00000424585 NEB-013 151496305-151513606 protein_coding
  ENST00000427231 NEB-203 151485339-151734487 protein_coding
  ENST00000434685 NEB-003 151485760-151525986 protein_coding
  ENST00000480784 NEB-012 151530641-151532163 retained_intron
  ENST00000483418 NEB-011 151516459-151519985 retained_intron
  ENST00000484968 NEB-009 151667835-151671380 retained_intron
  ENST00000486320 NEB-010 151615879-151617485 retained_intron
  ENST00000489048 NEB-015 151689198-151706931 retained_intron
  ENST00000497809 NEB-007 151491207-151493296 retained_intron
  ENST00000498015 NEB-016 151492099-151506947 processed_transcript
  ENST00000603639 NEB-017 151485760-151733156 protein_coding
  ENST00000604864 NEB-018 151485760-151733156 protein_coding
  ENST00000618972 NEB-204 151485339-151734487 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverMuscleOvaryTestisENST00000397337ENST00000397345ENST00000409198ENST00000413693ENST00000434685
Transcript ID Breast Heart Liver Muscle Ovary Testis
ENST00000397337 18.280±0.00 N/A N/A N/A N/A N/A
ENST00000397345 N/A N/A 1.018±0.00 66.965±0.00 N/A N/A
ENST00000409198 3.337±0.00 N/A 1.165±0.00 104.361±0.00 1.629±0.00 N/A
ENST00000413693 4.664±0.00 1.072±0.00 N/A N/A N/A 11.885±0.00
ENST00000434685 16.148±0.00 N/A N/A N/A N/A 27.747±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003S5 CIL_0003S5_0002 CGP 2:151357592-151508013
CIL_0003S6 CIL_0003S6_0002 CGP 2:151409883-151734487
CIL_0003RZ CIL_0003RZ_0002 CGP 2:151485336-151828492

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005829 TAS cytosol
GO:0007517 TAS muscle organ development
GO:0007525 NAS somatic muscle development
GO:0008307 TAS structural constituent of muscle
GO:0015629 TAS actin cytoskeleton
GO:0030018 IDA Z disc
GO:0030049 TAS muscle filament sliding
GO:0030832 NAS regulation of actin filament length
GO:0043292 IEA contractile fiber
GO:0055114 IEA oxidation-reduction process
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000032630 neb nebulin protein_coding Danio_rerio
ENSMUSG00000026950 Neb nebulin protein_coding Mus_musculus

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